NAME

OBO::Parser::OWLParser - An OWL parser (oboInOwl mapping).

SYNOPSIS

use OBO::Parser::OWLParser;

use strict;

my $my_parser = OBO::Parser::OWLParser->new;

my $ontology = $my_parser->work("cco.owl");

DESCRIPTION

An OWLParser object works on parsing an OWL file.

AUTHOR

Erick Antezana, <erant@psb.ugent.be>

COPYRIGHT AND LICENSE

Copyright (C) 2006, 2007, 2008 by Erick Antezana

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.7 or, at your option, any later version of Perl 5 you may have available.

work

  Usage    - $OWLParser->work($owl_file_path)
  Returns  - the parsed OWL ontology
  Args     - the OWL file to be parsed
  Function - parses an OWL file (oboInOwl mapping)

owl_id2obo_id

  Usage    - $obj->owl_id2obo_id($term)
  Returns  - the ID for OBO representation.
  Args     - the OWL-type ID.
  Function - Transform an OWL-type ID into an OBO-type one. E.g. CCO_I1234567 -> CCO:I1234567

char_hex_http

  Usage    - $obj->char_hex_http($seq)
  Returns  - the sequence with the hexadecimal representation for the http special characters
  Args     - the sequence of characters
  Function - Transforms a http character to its equivalent one in hexadecimal. E.g. : -> %3A