| This Release | ONTO-PERL-1.13 | [Download] [Browse] | 10 Jun 2008 | ||||
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| OBO::CCO::CCO_ID | A module for describing Cell Cycle Ontology (CCO) identifiers. Its namespace, subnamespace and number are stored. | ||
| OBO::CCO::CCO_ID_Set | An implementation of a set of OBO::CCO::CCO_ID objects. | ||
| OBO::CCO::CCO_ID_Term_Map | A map between CCO IDs and term names. | ||
| OBO::CCO::GoaAssociation | A GOA association record. | ||
| OBO::CCO::GoaAssociationSet | A GoaAssociationSet implementation | ||
| OBO::CCO::GoaParser | A GOA associations to OBO translator. | ||
| OBO::CCO::GoaToRDF | A GOA associations to RDF converter. | ||
| OBO::CCO::IntActParser | An IntAct to OBO parser/filter. | ||
| OBO::CCO::Interaction | An interaction from IntAct | ||
| OBO::CCO::InteractionManager | An IntAct to OBO parser/filter manager. | ||
| OBO::CCO::Interactor | An interactor from IntAct | ||
| OBO::CCO::NCBIParser | A NCBI taxonomy to OBO translator. | ||
| OBO::CCO::NCBIToRDF | A NCBI taxonomy dump to RDF converter. | ||
| OBO::CCO::NewIntActParser | A new IntAct to OBO parser/filter. | ||
| OBO::CCO::OrthoMCLParser | An orthoMCL data to OBO translator | ||
| OBO::CCO::UniProtParser | A UniProt to OBO translator. | ||
| OBO::CCO::XMLIntactParser | An IntAct XML parser | ||
| OBO::Core::Dbxref | A database reference structure. | ||
| OBO::Core::Def | A definition structure of the current term. A term must have zero or one instance of this type per term description. | ||
| OBO::Core::IDspace | A mapping between a "local" ID space and a "global" ID space. | ||
| OBO::Core::Ontology | An ontology holding terms and their relationships. | ||
| OBO::Core::Relationship | A relationship between two terms or two relationships within an ontology. | ||
| OBO::Core::RelationshipType | A type of relationship type in an ontology. | ||
| OBO::Core::Synonym | A term synonym. | ||
| OBO::Core::SynonymTypeDef | A synonym type definition. It should contain a synonym type name, a space, a quote enclosed description, and an optional scope specifier. | ||
| OBO::Core::Term | A universal/term/class/concept in an ontology. | ||
| OBO::Parser::OBOParser | An OBO (Open Biomedical Ontologies) file parser. | ||
| OBO::Parser::OWLParser | An OWL parser (oboInOwl mapping). | ||
| OBO::Util::DbxrefSet | A Dbxref set implementation. | ||
| OBO::Util::ObjectIdSet | A Set implementation of object IDs. | ||
| OBO::Util::ObjectSet | An implementation of a set of ontology objects. | ||
| OBO::Util::Ontolome | A set of ontologies. | ||
| OBO::Util::Set | A Set implementation. | ||
| OBO::Util::SynonymSet | A Set implementation of Synonyms. | ||
| OBO::Util::SynonymTypeDefSet | A Set implementation of Synonym Types. | ||
| OBO::Util::TermSet | A Set implementation. |
| ONTO-PERL | perl modules for CCO and OBO ontologies |
| get_ancestor_terms.pl | Collects the ancestor terms (list of IDs) from a given term (existing ID) in the given OBO ontology. |
| get_descendent_terms.pl | Collects the descendent terms (list of IDs) from a given term (existing ID) in the given OBO ontology. |
| go2owl.pl | Gene Ontology (in OBO) to OWL translator. |
| goa2rdf.pl | Generates a simple RDF graph from a given GOA file. |
| obo2owl.pl | OBO to OWL translator. |
| obo2rdf.pl | OBO to RDF translator. |
| obo2tran.pl | OBOF into RDF translator. The resulting file has (full) transitive closure. |
| obo2xml.pl | OBO to XML translator (CCO scheme). |
| obsolete_term_id_vs_def_in_go.pl | Obsolete terms vs their definitions. |
| obsolete_term_id_vs_name_in_go.pl | Obsolete terms vs their names. |
| owl2obo.pl | OWL to OBO translator (oboinowl mapping). |
