Changes for version 0.31
Documentation
perl modules for CCO and OBO ontologies
Gene Ontology (in OBO) to OWL translator.
OBO to OWL translator.
Modules
Reference structure.
Definition structure.
a GOA association record.
A mapping between a "local" ID space and a "global" ID space
an ontology holding terms and their relationships
a relationship between two terms or two relationships within an ontology.
a type of relationship type in an ontology
A term synonym.
a universal in an ontology
A GOA associations to OBO translator.
An IntAct to OBO parser/filter.
A NCBI taxonomy to OBO translator.
An OBO (Open Biomedical Ontologies) file parser.
A UniProt to OBO translator.
module for describing Cell Cycle Ontology (CCO) identifiers. Its namespace, subnamespace and number are stored.
class implementing a set of CCO::Util::CCO_ID objects.
a map between CCO IDs and term names.
a DbxrefSet implementation
a GoaAssociationSet implementation
a Set implementation
class implementing a set of ontology objects.
a Set implementation
a Set implementation
a Set implementation
Provides
in CCO/Core/Interaction.pm
in CCO/Core/Interactor.pm
in CCO/Util/XMLIntactParser.pm