Bio::Community::IO::Driver::generic - Driver to read and write files in a generic tab-delimited site-by-species table format
my $in = Bio::Community::IO->new( -file => 'gaas_communities.txt', -format => 'generic' ); # See Bio::Community::IO for more information
This Bio::Community::IO::Driver::generic driver reads and writes files in a generic format. Multiple communities can be written in a file to generate a site-by- species table (OTU table), in which the entries are tab-delimited. Example:
Species site A site B species 1 321 94 species 2 0 58 species 3 47 26
For each Bio::Community::Member $member generated from a generic site-by-species file, $member->desc() contains the content of the species field. Since the generic format does not specify a member ID, one is automatically generated and can be retrieved using $member->id().
Florent Angly email@example.com
User feedback is an integral part of the evolution of this and other Bioperl modules. Please direct usage questions or support issues to the mailing list, firstname.lastname@example.org, rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
If you have found a bug, please report it on the BioPerl bug tracking system to help us keep track the bugs and their resolution: https://redmine.open-bio.org/projects/bioperl/
Copyright 2011-2014 by Florent Angly <email@example.com>
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.10.1 or, at your option, any later version of Perl 5 you may have available.