Seeder::Index - Index object
Version 0.01
This module provides the get_index method.
use Seeder::Index;
my $index = Seeder::Index->new(
seed_width => "6",
out_file => "6.index",
);
$index -> get_index;
None by default
Title : new
Usage : my $index = Seeder::Index->new(%args);
Function: constructor for the Seeder::Index object
Returns : new Seeder::Index object
Args :
seed_width # Seed width
out_file # Output file
Title : get_background Usage : $background -> get_background; Function: coordination of the collection of index values Args : none
Title : _generate_index
Usage : $self->_generate_index;
Function: generate an index of neighbors for Hamming distances in the range
from 0 to 3
Returns : reference to a 2D array of indices
Args : none
Title : _output_index Usage : $self->_output_index; Function: writes index to output file Args : none
François Fauteux, <ffauteux at cpan.org>
Please report any bugs or feature requests to bug-motif at rt.cpan.org, or at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=Seeder. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes.
You can find documentation for this module with the perldoc command.
perldoc Seeder
You can also look for information at:
This algorithm was developed by François Fauteux, Mathieu Blanchette and Martina Strömvik. We thank the Perl Monks <http://www.perlmonks.org/> for their support.
Copyright 2008 François Fauteux, all rights reserved.
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
