Jason E. Stewart > Bio-Genex-2.6.0

Bio-Genex-2.6.0

This Release Bio-Genex-2.6.0  [Download] [Browse 06 Feb 2001
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LICENSE
Makefile.PL
MANIFEST
README

Modules

Bio::Genex::AL_Spots Methods for processing data from the GeneX DB table: AL_Spots     
Bio::Genex::AM_FactorValues Methods for processing data from the GeneX DB linking table: AM_FactorValues     
Bio::Genex::AM_Spots Methods for processing data from the GeneX DB table: AM_Spots     
Bio::Genex::AM_SuspectSpots Methods for processing data from the GeneX DB linking table: AM_SuspectSpots     
Bio::Genex::ArrayLayout Methods for processing data from the GeneX DB table: ArrayLayout     
Bio::Genex::ArrayMeasurement Methods for processing data from the GeneX DB table: ArrayMeasurement     
Bio::Genex::BlastHits Methods for processing data from the GeneX DB table: BlastHits     
Bio::Genex::Chromosome Methods for processing data from the GeneX DB table: Chromosome     
Bio::Genex::Citation Methods for processing data from the GeneX DB table: Citation     
Bio::Genex::Contact Methods for processing data from the GeneX DB table: Contact     
Bio::Genex::ControlledVocab Methods for processing data from the GeneX DB table: ControlledVocab     
Bio::Genex::ExperimentFactors Methods for processing data from the GeneX DB table: ExperimentFactors     
Bio::Genex::ExperimentSet Methods for processing data from the GeneX DB table: ExperimentSet     
Bio::Genex::ExternalDatabase Methods for processing data from the GeneX DB table: ExternalDatabase     
Bio::Genex::Fkey Perl extension for representing Database Foreign Keys     
Bio::Genex::GenexAdmin Methods for processing data from the GeneX DB table: GenexAdmin     
Bio::Genex::GroupLink Methods for processing data from the GeneX DB linking table: GroupLink     
Bio::Genex::GroupSec Methods for processing data from the GeneX DB table: GroupSec     
Bio::Genex::HotSpots Methods for processing data from the GeneX DB linking table: HotSpots     
Bio::Genex::Protocol Methods for processing data from the GeneX DB table: Protocol     
Bio::Genex::Sample Methods for processing data from the GeneX DB table: Sample     
Bio::Genex::SampleProtocols Methods for processing data from the GeneX DB linking table: SampleProtocols     
Bio::Genex::Scanner Methods for processing data from the GeneX DB table: Scanner     
Bio::Genex::Software Methods for processing data from the GeneX DB table: Software     
Bio::Genex::Species Methods for processing data from the GeneX DB table: Species     
Bio::Genex::SpotLink Methods for processing data from the GeneX DB linking table: SpotLink     
Bio::Genex::Spotter Methods for processing data from the GeneX DB table: Spotter     
Bio::Genex::TL_FactorValues Methods for processing data from the GeneX DB linking table: TL_FactorValues     
Bio::Genex::TreatmentLevel Methods for processing data from the GeneX DB table: TreatmentLevel     
Bio::Genex::Treatment_AMs Methods for processing data from the GeneX DB linking table: Treatment_AMs     
Bio::Genex::USF_ExternalDBLink Methods for processing data from the GeneX DB linking table: USF_ExternalDBLink     
Bio::Genex::UserSec Methods for processing data from the GeneX DB table: UserSec     
Bio::Genex::UserSequenceFeature Methods for processing data from the GeneX DB table: UserSequenceFeature     

Documentation

$full_module_name Methods for processing data from the GeneX DB $LINKING table: $module_name 
Bio::Genex::CSF_ExternalDBLink Methods for processing data from the GeneX DB linking table: CSF_ExternalDBLink 
Bio::Genex::CanonicalSequenceFeature Methods for processing data from the GeneX DB table: CanonicalSequenceFeature 
Bio::Genex::CitationLink Methods for processing data from the GeneX DB linking table: CitationLink 
Bio::Genex::RelatedCSF Methods for processing data from the GeneX DB linking table: RelatedCSF 
Bio::Genex::UserCanonicalLink Methods for processing data from the GeneX DB linking table: UserCanonicalLink 
DBUtils a module for useful Database utilities 
Genex Perl extension for processing data from a GeneX DB 
HTMLUtils a module for useful HTML utilities for Genex DBs 
XMLUtils a module for useful XML utilities for Genex DBs 
control-bundle.pl: a CGI script for creating a Gene Expression Markup Language (GeneXML) control bundle file. 
curation-tool-login.pl: a CGI script for downloading a Gene Expression Markup Language (GEML) control bundle file to the curation tool. 
db2xml.pl: a script for export data from a Genex DB as a Gene Expression Markup Language (GeneXML) file 
pass-auth-login.pl: a CGI script for validating a user login to the DB. 
pass-login.pl: a CGI script for downloading a Gene Expression Markup Language (GeneXML) experiment set files to the curation tool. 
pass-mod-invalid.pl: a CGI script for modifying the UserSec password information. 
password.pl: a CGI script for modifying the UserSec password information. 

Other Files

html/AL_Spots.html
html/AM_FactorValues.html
html/AM_Spots.html
html/AM_SuspectSpots.html
html/ArrayLayout.html
html/ArrayMeasurement.html
html/BlastHits.html
html/CSF_ExternalDBLink.html
html/CanonicalSequenceFeature.html
html/Chromosome.html
html/Citation.html
html/CitationLink.html
html/Contact.html
html/ControlledVocab.html
html/DBUtils.html
html/ExperimentFactors.html
html/ExperimentSet.html
html/ExternalDatabase.html
html/Genex.html
html/Genex/AL_Spots.html
html/Genex/AM_FactorValues.html
html/Genex/AM_Spots.html
html/Genex/AM_SuspectSpots.html
html/Genex/ArrayLayout.html
html/Genex/ArrayMeasurement.html
html/Genex/BlastHits.html
html/Genex/CSF_ExternalDBLink.html
html/Genex/CanonicalSequenceFeature.html
html/Genex/Chromosome.html
html/Genex/Citation.html
html/Genex/CitationLink.html
html/Genex/Contact.html
html/Genex/ControlledVocab.html
html/Genex/DBUtils.html
html/Genex/ExperimentFactors.html
html/Genex/ExperimentSet.html
html/Genex/ExternalDatabase.html
html/Genex/Genex.html
html/Genex/GroupLink.html
html/Genex/GroupSec.html
html/Genex/HTMLUtils.html
html/Genex/HotSpots.html
html/Genex/Protocol.html
html/Genex/RelatedCSF.html
html/Genex/Sample.html
html/Genex/SampleProtocols.html
html/Genex/Scanner.html
html/Genex/Software.html
html/Genex/Species.html
html/Genex/SpotLink.html
html/Genex/Spotter.html
html/Genex/TL_FactorValues.html
html/Genex/TreatmentLevel.html
html/Genex/Treatment_AMs.html
html/Genex/USF_ExternalDBLink.html
html/Genex/UserCanonicalLink.html
html/Genex/UserSec.html
html/Genex/UserSequenceFeature.html
html/Genex/XMLUtils.html
html/Genex/control-bundle.pl.html
html/Genex/curation-tool-login.pl.html
html/Genex/db2xml.pl.html
html/Genex/index.html
html/Genex/tutorial.html
html/GroupLink.html
html/GroupSec.html
html/HTMLUtils.html
html/HotSpots.html
html/Protocol.html
html/RelatedCSF.html
html/Sample.html
html/SampleProtocols.html
html/Scanner.html
html/Software.html
html/Species.html
html/SpotLink.html
html/Spotter.html
html/TL_FactorValues.html
html/TreatmentLevel.html
html/Treatment_AMs.html
html/USF_ExternalDBLink.html
html/UserCanonicalLink.html
html/UserSec.html
html/UserSequenceFeature.html
html/XMLUtils.html
html/control-bundle.pl.html
html/curation-tool-login.pl.html
html/db2xml.pl.html
html/index.html
html/tutorial.html