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lib/BioX/Workflow/Command.pm
lib/BioX/Workflow/Command/Utils/Create.pm
lib/BioX/Workflow/Command/Utils/Files.pm
lib/BioX/Workflow/Command/Utils/Log.pm
lib/BioX/Workflow/Command/add.pm
lib/BioX/Workflow/Command/new.pm
lib/BioX/Workflow/Command/run.pm
lib/BioX/Workflow/Command/run/Rules/Directives.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Interpolate.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Interpolate/Mustache.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Interpolate/Text.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Sample.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Types/Array.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Types/CSV.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Types/Config.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Types/Glob.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Types/HPC.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Types/Hash.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Types/List.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Types/Mustache.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Types/Path.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Types/Roles/File.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Types/Stash.pm
lib/BioX/Workflow/Command/run/Rules/Directives/Walk.pm
lib/BioX/Workflow/Command/run/Rules/Rules.pm
lib/BioX/Workflow/Command/run/Utils/Attributes.pm
lib/BioX/Workflow/Command/run/Utils/Debug.pm
lib/BioX/Workflow/Command/run/Utils/Files/ResolveDeps.pm
lib/BioX/Workflow/Command/run/Utils/Files/TrackChanges.pm
lib/BioX/Workflow/Command/run/Utils/Samples.pm
lib/BioX/Workflow/Command/run/Utils/WriteMeta.pm
lib/BioX/Workflow/Command/stats.pm
lib/BioX/Workflow/Command/validate.pm
script/biox
script/biox-workflow.pl
t/author-pod-syntax.t
t/basic.t
t/data/chipseq-noPeaks-deeptools2-mouse10.yml
t/data/non-model-resequencing-BWA-MEM.yml
t/data/non-model-resequencing-anolis-BWA-MEM.yml
t/data/non-model-resequencing-dpPilion.yml
t/data/non-model-resequencing.yml
t/data/resequencing-human-complete.yml
t/data/rnaseq_ercc.yml
t/data/rnaseq_without_DGE-DM.yml
t/data/rnaseq_without_DGE-Human38p2.yml
t/data/rnaseq_without_DGE-Mouse10.yml
t/lib/TestMethod/Base.pm
t/lib/TestsFor/BioX/Workflow/Command/Test001.pm
t/lib/TestsFor/BioX/Workflow/Command/run/Test001.pm
t/lib/TestsFor/BioX/Workflow/Command/run/Test002.pm
t/lib/TestsFor/BioX/Workflow/Command/run/Test003.pm
t/lib/TestsFor/BioX/Workflow/Command/run/Test004.pm
t/lib/TestsFor/BioX/Workflow/Command/run/Test005.pm
t/lib/TestsFor/BioX/Workflow/Command/run/Test006.pm
t/lib/TestsFor/BioX/Workflow/Command/run/Test007.pm
t/lib/TestsFor/BioX/Workflow/Command/run/Test008.pm
t/lib/TestsFor/BioX/Workflow/Command/run/Test009.pm
t/lib/TestsFor/BioX/Workflow/Command/run/Test010.pm
t/lib/TestsFor/BioX/Workflow/Command/run/Test011.pm
t/lib/TestsFor/BioX/Workflow/Command/run/Test012.pm
t/test_class_tests.t