infile disable infile and read directly from the stream
go
Initialize MCE things and use Runner::Init to parse and exec commands
parse_file_gnuparallel
Parse the file of commands and send each command off to the queue.
#TODO #Merge mce/threads subroutines
NAME
HPC::Runner::GnuParallel - Run arbitrary bash commands using GNU parallel. Can be used on its own or as a part of HPC::Runner::Slurm.
SYNOPSIS
use HPC::Runner::GnuParallel;
Run straight as :
cat stuff.cmd | parallelparser.pl | parallel --joblog `pwd`/runtasks.log --gnu -N 1 -q gnuparallelrunner.pl --command `echo {}` --outdir `pwd`/gnulogs/
Where stuff.cmd is a file with the commands you need run.
Or as a part or HPC::Runner::Slurm distro.DESCRIPTION
HPC::Runner::GnuParallel is a part of a suite of tools to make HPC easy.
AUTHOR
Jillian Rowe <jillian.e.rowe@gmail.com>
COPYRIGHT
Copyright 2015- Jillian Rowe
ACKNOWLEDGEMENTS
This module was originally developed at and for Weill Cornell Medical College in Qatar. With approval from WCMC-Q, this information was generalized and put on github, for which the authors would like to express their gratitude.
LICENSE
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.