Bio::Das::ProServer::SourceAdaptor::edgeexpress Auto-config ProServer that talks with an EdgeExpress database
$LastChangedRevision: 2 $
An auto-config ProServer that talks with an EdgeExpress database - auto-configs segments and sources from the database - Builds simple DAS features from the EdgeExpress database - uses EdgeExpress perl API for enhanced speed and smart caching
[my_eedb] state = on adaptor = edgeexpress transport = edgeexpress eedb_url = mysql://<user>:<pass>@<host>:<port optional>/<database_name> assembly = <assembly name as used in the eeDB> #eeDB is multi_species, each DAS source is not description = description of the EdgeExpressDB this is configured for
ProServer Bio::Das::ProServer::SourceAdaptor EdgeExpress EEDB::FeatureSource; EEDB::Feature; EEDB::Assembly; EEDB::Chrom;
Jessica Severin <severin@gsc.riken.jp>.
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
To install EEDB, copy and paste the appropriate command in to your terminal.
cpanm
cpanm EEDB
CPAN shell
perl -MCPAN -e shell install EEDB
For more information on module installation, please visit the detailed CPAN module installation guide.