John Nolan > Algorithm-Cluster-1.17 > Algorithm::Cluster

Download:
Algorithm-Cluster-1.17.tar.gz

Dependencies

Annotate this POD

Related Modules

List::Util
Data::Dumper
more...
By perlmonks.org

CPAN RT

New  6
Open  2
View/Report Bugs
Module Version: 1.17   Source   Latest Release: Algorithm-Cluster-1.52

NAME ^

Algorithm::Cluster - perl interface to Michiel Jan Laurens de Hoon's C clustering library

DESCRIPTION ^

This module is an interface to the C Clustering Library, a general purpose library implementing functions for hierarchical clustering (pairwise simple, complete, average, and centroid linkage), along with k-means and k-medians clustering, and 2D self-organizing maps. The library is distributed along with Cluster 3.0, an enhanced version of the famous Cluster program originally written by Michael Eisen while at Stanford University. The C clustering library was written by Michiel de Hoon.

EXAMPLES ^

See the scripts in the examples subdirectory of the package.

CHANGES ^

TO DO ^

THANKS ^

Thanks to Michiel de Hoon for making the C Clustering library available, and for his kind assistance with this module. Thanks also to Michael Eisen, for creating the software packages Cluster and TreeView.

AUTHOR ^

John Nolan jpnolan@sonic.net 2003. A copyright statment is contained in the source code itself.

This module is a Perl wrapper for the C clustering library for cDNA microarray data, Copyright (C) 2002 Michiel Jan Laurens de Hoon.

See the source of Cluster.pm for a full copyright statement.

syntax highlighting: