Joachim Bargsten > Bio-Gonzales-0.0543 > show-align2clustalw.pl

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Source   Latest Release: Bio-Gonzales-0.0544

NAME ^

show-align2clustalw.pl - convert mummer alignment files to clustalw format

SYNOPSIS ^

    # store results in OUTPUT.aln
    perl show-align2clustalw.pl [OPTIONS] <MUMMER_ALIGNMENT.aln> <CLUSTALW_OUTPUT.aln>

    # print results to standard output
    perl show-align2clustalw.pl [OPTIONS] <MUMMER_ALIGNMENT.aln>
    # or
    perl show-align2clustalw.pl [OPTIONS] <MUMMER_ALIGNMENT.aln> -

DESCRIPTION ^

This script converts MUMMER's show-aligns output to clustalw formatted output.

OPTIONS ^

Alternative option names are separated by "|".

--help|h|?

Complete help.

SEE ALSO ^

Bio::FeatureIO, Bio::SeqFeature::Generic

AUTHOR ^

jw bargsten, <joachim.bargsten at wur.nl>

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