Joachim Bargsten > Bio-Gonzales-0.0543 > Bio::Gonzales::Align::Util

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Source   Latest Release: Bio-Gonzales-0.0549

NAME ^

Bio::Gonzales::Align::Util - Utility functions for aligment stuff

SYNOPSIS ^

    use Bio::Gonzales::Align::Util qw(phylip_spew);

DESCRIPTION ^

OPTIONS ^

SUBROUTINES ^

phylip_spew($file_or_fh, $mode, $seqs)

Spew out the seqs to a file or file handle. Following modes are available:

s|seq|sequential

Sequential format, cuts of the ID at 10 characters starting from the beginning

r|relax|relaxed s|seq|sequential

The relaxed phylip format.

SEE ALSO ^

AUTHOR ^

jw bargsten, <joachim.bargsten at wur.nl>

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