Joachim Bargsten > Bio-Gonzales-0.0543 > Bio::Gonzales::Seq::Filter

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Module Version: 0.0101   Source   Latest Release: Bio-Gonzales-0.0547_01

NAME ^

Bio::Gonzales::Seq::Filter - filter sequence data

SYNOPSIS ^

    use Bio::Gonzales::Seq::Filter qw(clean_pep_seq clean_dna_seq clean_rna_seq);

DESCRIPTION ^

SUBROUTINES ^

$seqs = clean_dna_seq(\@seqs!, \%config)

Do some cleaning, substitute invalid nucleotides with N, remove the description of the sequence objects.

clean_dna_seq leaves the sequence object description untouched if

  %config = ( no_desc => 0 );
$seqs = clean_pep_seq(\@seqs!, \%config)
$seqs = clean_rna_seq(\@seqs!, \%config)

SEE ALSO ^

AUTHOR ^

jw bargsten, <jwb at cpan dot org>

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