Joachim Bargsten > Bio-Gonzales-0.0544 > Bio::Gonzales::Search::IO::BLAST

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Module Version: 0.0101   Source   Latest Release: Bio-Gonzales-0.0547_01

NAME ^

Bio::Gonzales::Search::IO::BLAST

SYNOPSIS ^

    Bio::Gonzales::Search::IO::BLAST qw(makeblastdb instantblast)

DESCRIPTION ^

OPTIONS ^

SUBROUTINES ^

$db_location = makeblastdb(\%config)

Creates a blast database with the config options supplied. Config options are:

    %config = (
        'seq_file!'  => undef,
        title        => 'basename of seq_file',
        parse_seqids => 1,
        hash_index   => 1,
        'alphabet!'  => 'n(ucleotide)? || p(rotein)? || d(na)? || a(a)?',
        db_prefix    => 'basename of seq_file.bdb',
        wd           => './',
    );

Options with ! are required.

SEE ALSO ^

AUTHOR ^

jw bargsten, <joachim.bargsten at wur.nl>

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