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2017-08-08_test/gonz.log
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gonz.log
lib/Bio/Gonzales.pm
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lib/Bio/Gonzales/Feat/IO/CDhit.pm
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lib/Bio/Gonzales/Phylo/Dendroscope.pm
lib/Bio/Gonzales/Phylo/IO.pm
lib/Bio/Gonzales/Phylo/Util.pm
lib/Bio/Gonzales/PrimarySeqIX.pm
lib/Bio/Gonzales/Project.pm
lib/Bio/Gonzales/Project/Functions.pm
lib/Bio/Gonzales/Project/Introduction.pod
lib/Bio/Gonzales/Project/gonz.log
lib/Bio/Gonzales/Range/Cluster.pm
lib/Bio/Gonzales/Range/GroupedOverlap.pm
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lib/Bio/Gonzales/Range/Util.pm
lib/Bio/Gonzales/Role/BioPerl/Constructor.pm
lib/Bio/Gonzales/Search/IO/BLAST.pm
lib/Bio/Gonzales/Search/IO/HMMER3.pm
lib/Bio/Gonzales/Seq.pm
lib/Bio/Gonzales/Seq/Filter.pm
lib/Bio/Gonzales/Seq/Filter/DuplicateSeqs.pm
lib/Bio/Gonzales/Seq/Filter/ProteinCleaner.pm
lib/Bio/Gonzales/Seq/IO.pm
lib/Bio/Gonzales/Seq/IO/Fasta.pm
lib/Bio/Gonzales/Seq/IO/fastq.pm
lib/Bio/Gonzales/Seq/LongestTranscript.pm
lib/Bio/Gonzales/Seq/Util.pm
lib/Bio/Gonzales/Seq/Validate/fasta.pm
lib/Bio/Gonzales/Stat/Util.pm
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lib/Bio/Gonzales/SummarizedExperiment.pm
lib/Bio/Gonzales/Tools/SeqMask.pm
lib/Bio/Gonzales/Tools/SeqStats.pm
lib/Bio/Gonzales/Util.pm
lib/Bio/Gonzales/Util/Cerial.pm
lib/Bio/Gonzales/Util/Development.pm
lib/Bio/Gonzales/Util/Development/File.pm
lib/Bio/Gonzales/Util/Development/Module.pm
lib/Bio/Gonzales/Util/File.pm
lib/Bio/Gonzales/Util/Graphics/Color/Generator.pm
lib/Bio/Gonzales/Util/IO/Compressed.pm
lib/Bio/Gonzales/Util/Log.pm
lib/Bio/Gonzales/Util/Math.pm
lib/Bio/Gonzales/Util/Math/kNN/via/Distances.pm
lib/Bio/Gonzales/Util/Role/FileIO.pm
lib/Bio/Gonzales/Util/Text.pm
lib/Bio/Gonzales/Var/IO/VCF.pm
lib/Bio/Gonzales/Var/Util.pm
t/00-load.t
t/Bio-Gonzales-Align-IO.t
t/Bio-Gonzales-Align-Jalview.t
t/Bio-Gonzales-Domain-Group.t
t/Bio-Gonzales-Feat-IO-BED.t
t/Bio-Gonzales-Feat-IO-GFF3.t
t/Bio-Gonzales-Feat-IO-SWISS.t
t/Bio-Gonzales-Feat.t
t/Bio-Gonzales-Matrix-IO-mcl.t
t/Bio-Gonzales-Matrix-IO.t
t/Bio-Gonzales-Matrix-Util.t
t/Bio-Gonzales-Project-Functions.t
t/Bio-Gonzales-Project.t
t/Bio-Gonzales-Range-Cluster.t
t/Bio-Gonzales-Range-Overlap.t
t/Bio-Gonzales-Range-Util.t
t/Bio-Gonzales-Role-BioPerl-Constructor.t
t/Bio-Gonzales-Search-IO-HMMER3.t
t/Bio-Gonzales-Search-IO-HMMER3_no-hits.result
t/Bio-Gonzales-Seq-Filter-pep_clean.fa
t/Bio-Gonzales-Seq-Filter-pep_dirty.fa
t/Bio-Gonzales-Seq-Filter.t
t/Bio-Gonzales-Seq-IO-fastq.solexa.ref.cache.yml
t/Bio-Gonzales-Seq-IO-fastq.t
t/Bio-Gonzales-Seq-Util.t
t/Bio-Gonzales-Seq-Validate-fasta.t
t/Bio-Gonzales-Seq.t
t/Bio-Gonzales-SummarizedExperiment.t
t/Bio-Gonzales-Tools-SeqMask.t
t/Bio-Gonzales-Util-Cerial.t
t/Bio-Gonzales-Util-File.t
t/Bio-Gonzales-Util-Log.t
t/Bio-Gonzales-Util-Log_threads.t
t/Bio-Gonzales-Util-Math.t
t/Bio-Gonzales-Util-Text.t
t/Bio-Gonzales-Util.t
t/Bio-Gonzales-Var-Util.t
t/IDMapIO.t
t/Math-kNN-via-Distances.t
t/Matrix-IO-mcl.distances
t/Matrix-IO-mcl_phylip.distances
t/accession.hmmresult
t/bin_show-align2clustalw.pl
t/boilerplate.t
t/data/HMMSearch_Speruvianum.gff
t/data/HMMSearch_Speruvianum.result
t/data/example.pep.fa
t/data/map.tsv
t/data/mini.fasta
t/data/rprot-domains_ebakker.fasta
t/data/starch_search_ioannis.hmmer3.reference_result.yml
t/data/starch_search_ioannis.hmmer3.result
t/data/test.aln.fa
t/data/test.aln.fa.no-relaxed.ref.phylip
t/data/test.aln.fa.relaxed.ref.phylip
t/data/test.aln.interleaved.phylip
t/data/test.aln.interleaved.ref.phylip
t/data/test.show-aligns.nt.aln
t/data/test.tsv
t/data/uniprot_sprot.dat
t/data/uniprot_trembl.dat
t/gonz_unmap.t
t/idlist.txt
t/idlist.txt.bg.gz
t/idlist.txt.bz2
t/idlist.txt.gz
t/idlist.txt.xz
t/manifest.t
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