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Joachim Bargsten > Bio-Grid-Run-SGE-0.032 > Bio::Grid::Run::SGE::Util::Blast

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Module Version: 0.0101   Source   Latest Release: Bio-Grid-Run-SGE-0.060

NAME ^

Bio::Grid::Run::SGE::Util::Blast - basic blast utitlity functions for cluster-wide operations

SYNOPSIS ^

    use Bio::Grid::Run::SGE::Util::Blast qw(formatdb);

DESCRIPTION ^

OPTIONS ^

SUBROUTINES ^

formatdb(\%config)

formatdb takes the following parameters:

    %config = (
        db_seq_files => 'sequence files used for db creation',
        input_files? => 'is used for db creation if seq_db_files is not defined',
        blast_db_name => 'database name',
        db_type => 'database type',
        blast_db_dir => 'directory for blast database',
        no_prompt => 0, #don't ask any questions, just do it
    )

SEE ALSO ^

AUTHOR ^

jw bargsten, <joachim.bargsten at wur.nl>

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