| This Release | Bio-Graphics-2.31 | [Download] [Browse] | 25 Sep 2012 | |||
| Latest Release | Bio-Graphics-2.34 | [Download] [Browse] | 16 May 2013 | |||
| Other Releases | ||||||
| Links | [ Discussion Forum ] [ View/Report Bugs (13) ] [ Dependencies ] [ Other Tools ] | |||||
| CPAN Testers | PASS (12) [ View Reports ] [ Perl/Platform Version Matrix ] | |||||
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| License | The Perl 5 License (Artistic 1 & GPL 1) | |||||
| Special Files |
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| Bio::Graphics | Generate GD images of Bio::Seq objects | 2.31 | |
| Bio::Graphics::ConfiguratorI | A sectioned map of configuration options (a map of maps), with a default section. Intended to augment existing tag->value semantics (ie. of Bio::AnnotationCollectionI) for object-representation inform | ||
| Bio::Graphics::DrawTransmembrane | draw a cartoon of an Alpha-helical transmembrane protein. | ||
| Bio::Graphics::Feature | A simple feature object for use with Bio::Graphics::Panel | ||
| Bio::Graphics::FeatureBase | Compatibility module | ||
| Bio::Graphics::FeatureDir | A directory of feature files and conf files | ||
| Bio::Graphics::FeatureFile | A set of Bio::Graphics features, stored in a file | ||
| Bio::Graphics::FeatureFile::Iterator | Iterator across a Bio::Graphics::FeatureFile | ||
| Bio::Graphics::FileSplitter | |||
| Bio::Graphics::Glyph | Base class for Bio::Graphics::Glyph objects | ||
| Bio::Graphics::Glyph::Factory | Factory for Bio::Graphics::Glyph objects | ||
| Bio::Graphics::Glyph::alignment | The "alignment" glyph | ||
| Bio::Graphics::Glyph::allele_tower | The "allele_tower" glyph | ||
| Bio::Graphics::Glyph::anchored_arrow | The "anchored_arrow" glyph | ||
| Bio::Graphics::Glyph::arrow | the "arrow" glyph | ||
| Bio::Graphics::Glyph::box | The "box" glyph | ||
| Bio::Graphics::Glyph::broken_line | The "broken line" glyph | ||
| Bio::Graphics::Glyph::cds | The "cds" glyph | ||
| Bio::Graphics::Glyph::christmas_arrow | The "christmas arrow" glyph | ||
| Bio::Graphics::Glyph::cross | |||
| Bio::Graphics::Glyph::crossbox | The "crossbox" glyph | ||
| Bio::Graphics::Glyph::dashed_line | The "dashed line" glyph | ||
| Bio::Graphics::Glyph::diamond | The "diamond" glyph | ||
| Bio::Graphics::Glyph::dna | The "dna" glyph | ||
| Bio::Graphics::Glyph::dot | The "dot" glyph | ||
| Bio::Graphics::Glyph::dumbbell | A glyph that draws a "dumbbell" with the same shapes on both ends. | ||
| Bio::Graphics::Glyph::ellipse | The "ellipse" glyph | ||
| Bio::Graphics::Glyph::ex | the "ex", or "crossed box" glyph | ||
| Bio::Graphics::Glyph::extending_arrow | The "extending arrow" glyph | ||
| Bio::Graphics::Glyph::fb_shmiggle | |||
| Bio::Graphics::Glyph::fixedwidth | A base class fixed width glyphs | ||
| Bio::Graphics::Glyph::flag | the "flag" glyph | ||
| Bio::Graphics::Glyph::gene | A GFF3-compatible gene glyph | ||
| Bio::Graphics::Glyph::generic | The "generic" glyph | ||
| Bio::Graphics::Glyph::graded_segments | The "graded_segments" glyph | ||
| Bio::Graphics::Glyph::group | The "group" glyph | ||
| Bio::Graphics::Glyph::hat | The "hat" glyph | ||
| Bio::Graphics::Glyph::heat_map | The "heat_map" glyph | ||
| Bio::Graphics::Glyph::heat_map_ideogram | The "heat_map_ideogram" glyph | ||
| Bio::Graphics::Glyph::heterogeneous_segments | The "heterogeneous_segments" glyph | ||
| Bio::Graphics::Glyph::hidden | The "hidden" glyph | ||
| Bio::Graphics::Glyph::hybrid_plot | An xyplot plot drawing dual graph using data from two or more wiggle files per track | 1.0 | |
| Bio::Graphics::Glyph::ideogram | The "ideogram" glyph | ||
| Bio::Graphics::Glyph::image | A glyph that draws photographs & other images | ||
| Bio::Graphics::Glyph::lightning | The "lightning" glyph | ||
| Bio::Graphics::Glyph::line | The "line" glyph | ||
| Bio::Graphics::Glyph::merge_parts | a base class which suppors semantic zooming of scored alignment features | ||
| Bio::Graphics::Glyph::merged_alignment | The "merged_alignment" glyph | ||
| Bio::Graphics::Glyph::minmax | The minmax glyph | ||
| Bio::Graphics::Glyph::operon | The "polycistronic operon" glyph | ||
| Bio::Graphics::Glyph::oval | The "oval" glyph | ||
| Bio::Graphics::Glyph::pairplot | The "pairwise plot" glyph | ||
| Bio::Graphics::Glyph::pentagram | The "pentagram" glyph | ||
| Bio::Graphics::Glyph::phylo_align | The "phylogenetic alignment" glyph | ||
| Bio::Graphics::Glyph::pinsertion | The "Drosophila P-element Insertion" glyph | ||
| Bio::Graphics::Glyph::point_glyph | |||
| Bio::Graphics::Glyph::primers | The "STS primers" glyph | ||
| Bio::Graphics::Glyph::processed_transcript | The sequence ontology transcript glyph | ||
| Bio::Graphics::Glyph::protein | The "protein" glyph | ||
| Bio::Graphics::Glyph::ragged_ends | The "ragged ends" glyph | ||
| Bio::Graphics::Glyph::rainbow_gene | A GFF3-compatible gene glyph | ||
| Bio::Graphics::Glyph::read_pair | |||
| Bio::Graphics::Glyph::redgreen_box | The "redgreen_box" glyph | ||
| Bio::Graphics::Glyph::redgreen_segment | The "redgreen_segments" glyph | ||
| Bio::Graphics::Glyph::repeating_shape | A glyph that draws the same shape repeatedly. | ||
| Bio::Graphics::Glyph::rndrect | The "round rect" glyph | ||
| Bio::Graphics::Glyph::ruler_arrow | glyph for drawing an arrow as ruler (5' and 3' are marked as label) | ||
| Bio::Graphics::Glyph::saw_teeth | The "saw teeth" glyph | ||
| Bio::Graphics::Glyph::scale | The "scale" glyph | ||
| Bio::Graphics::Glyph::segmented_keyglyph | The "segmented_keyglyph" glyph | ||
| Bio::Graphics::Glyph::segments | The "segments" glyph | ||
| Bio::Graphics::Glyph::smoothing | |||
| Bio::Graphics::Glyph::so_transcript | The sequence ontology transcript glyph | ||
| Bio::Graphics::Glyph::span | The "span" glyph | ||
| Bio::Graphics::Glyph::spectrogram | The "spectrogram" glyph | ||
| Bio::Graphics::Glyph::splice_site | The "splice_site" glyph | ||
| Bio::Graphics::Glyph::stackedplot | The stackedplot glyph | ||
| Bio::Graphics::Glyph::ternary_plot | Draw ternary plot data | ||
| Bio::Graphics::Glyph::text_in_box | The "text in box" glyph | ||
| Bio::Graphics::Glyph::three_letters | DAS-compatible package to use for drawing a line of groups of three letters | ||
| Bio::Graphics::Glyph::tic_tac_toe | The "tic-tac-toe" glyph | ||
| Bio::Graphics::Glyph::toomany | The "too many to show" glyph | ||
| Bio::Graphics::Glyph::trace | A glyph that visualizes a trace file | ||
| Bio::Graphics::Glyph::track | The "track" glyph | ||
| Bio::Graphics::Glyph::transcript | The "transcript" glyph | ||
| Bio::Graphics::Glyph::transcript2 | The "transcript2" glyph | ||
| Bio::Graphics::Glyph::translation | The "6-frame translation" glyph | ||
| Bio::Graphics::Glyph::triangle | The "triangle" glyph | ||
| Bio::Graphics::Glyph::two_bolts | The "two bolts" glyph | ||
| Bio::Graphics::Glyph::vista_plot | The "vista_plot" glyph | 1.0 | |
| Bio::Graphics::Glyph::wave | The "wave" glyph | ||
| Bio::Graphics::Glyph::weighted_arrow | The "weighted arrow" glyph | ||
| Bio::Graphics::Glyph::whiskerplot | The whiskerplot glyph | ||
| Bio::Graphics::Glyph::wiggle_box | A generic box glyph compatible with dense "wig"data | ||
| Bio::Graphics::Glyph::wiggle_data | |||
| Bio::Graphics::Glyph::wiggle_density | A density plot compatible with dense "wig"data | ||
| Bio::Graphics::Glyph::wiggle_whiskers | |||
| Bio::Graphics::Glyph::wiggle_xyplot | An xyplot plot compatible with dense "wig"data | ||
| Bio::Graphics::Glyph::xyplot | The xyplot glyph | ||
| Bio::Graphics::Layout | |||
| Bio::Graphics::Layout::Contour | |||
| Bio::Graphics::Math | |||
| Bio::Graphics::Panel | Generate GD images of Bio::Seq objects | ||
| Bio::Graphics::Pictogram | generate SVG output of Pictogram display for consensus motifs | ||
| Bio::Graphics::RendererI | A renderer for the Bio::Graphics class that renders Bio::SeqFeature::CollectionI objects onto Bio::Graphics::Panels using configuration information provided by a Bio::Graphics::ConfiguratorI. | ||
| Bio::Graphics::Util | non-object-oriented utilities used in Bio::Graphics modules | ||
| Bio::Graphics::Wiggle | Binary storage for dense genomic features | 1.0 | |
| Bio::Graphics::Wiggle::Loader |
| feature_draw.pl | Render a Bio::Graphics Feature File |
| frend.pl | Render a Bio::Graphics Feature File on the web |
| search_overview | Render a SearchIO parser report into a simple overview graphic |
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README.bioperl |
