Bio::Graphics::Browser2::Plugin::AlignTwoSequences -- a plugin that executes NCBI's bl2seq on the current view
in 0X.organism.conf: [AlignTwoSequences:plugin] bl2seq_executable = /usr/local/BLAST/bl2seq
This Gbrowse plugin will take a sequence (entered in the configuration screen) and BLAST it against the current display, with hits as new sequence features.
You must, of course, have the NCBI Blast suite of programs installed, you must have configured the plugin to be visible, and you must set a single plugin parameter in the 0X.organism.conf file: [AlignTwoSequences:plugin] bl2seq_executable = /path/to/your/bl2seq
To install CGI::Toggle, copy and paste the appropriate command in to your terminal.
cpanm
cpanm CGI::Toggle
CPAN shell
perl -MCPAN -e shell install CGI::Toggle
For more information on module installation, please visit the detailed CPAN module installation guide.