Leon Timmermans > Bio-DNA-Incomplete-0.003 > Bio::DNA::Incomplete

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Module Version: 0.003   Source   Latest Release: Bio-DNA-Incomplete-0.004

NAME ^

Bio::DNA::Incomplete - Match incompletely specified bases in nucleic acid sequences

VERSION ^

version 0.003

DESCRIPTION ^

Sometimes DNA patterns are given with incomplete nucleotides that match more than one real nucleotide. This module helps you deal with them.

FUNCTIONS ^

match_pattern($pattern, @things_to_test)

Returns the list of sequences that match $pattern.

pattern_to_regex($pattern)

Returns a compiled regex which is the equivalent of the pattern.

pattern_to_regex_string($pattern)

Returns a regex string which is the equivalent of the pattern.

all_possibilities($pattern)

Returns a list of all possible sequences that can match the pattern.

SEE ALSO ^

Nomenclature for Incompletely Specified Bases in Nucleic Acid Sequences
* Text::Glob

AUTHOR ^

Leon Timmermans <leont@cpan.org>

COPYRIGHT AND LICENSE ^

This software is copyright (c) 2011 by Leon Timmermans, Utrecht University.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.

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