Leon Timmermans > Bio-SFF-0.007 > Bio::SFF::Reader::Random

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Module Version: 0.007   Source  

NAME ^

Bio::SFF::Reader::Random - Random-access SFF reader

VERSION ^

version 0.007

SYNOPSIS ^

 my $reader = Bio::SFF::Reader::Random->new(file => $filename);
 if (my $entry = $reader->lookup('ABCDEF')) {
     say '>', $entry->name;
     say $entry->bases;
 }
 else {
     say 'No such entry "ABCDEF"';
 }

DESCRIPTION ^

This class implements Bio::SFF::Reader. It provides random access to an SFF file.

METHODS ^

lookup($name)

This will look up a named sequence, and return it. Note that this will affect the iterator.

AUTHOR ^

Leon Timmermans <leont@cpan.org>

COPYRIGHT AND LICENSE ^

This software is copyright (c) 2011 by Leon Timmermans, Utrecht University.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.

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