Jonathan Leto > App-Mimosa-0.02 > App::Mimosa::Schema::BCS::Result::Mimosa::SequenceSet

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NAME ^

Bio::Chado::Schema::Result::Mimosa::SequenceSet - a set of sequences (like a BLAST database)

COLUMNS ^

mimosa_sequence_set_id

Auto-incrementing surrogate primary key.

shortname

Unique short name for referring to this set. For example, ITAG2.2_cdnas.

Not null, varchar(255).

sha1

SHA1 of the full FASTA of this sequence set. Nullable.

title

User-visible title of the sequence set.

Not null. Varchar(255).

description

Text description of the set, probably stored in Markdown or some similar format.

Nullable.

alphabet

Sequence type, either 'protein' or 'nucleotide'.

Not null. Varchar(20).

source_spec

Specially-formatted text representing how to fetch new copies of this sequence set.

This text will be interpreted by software for fetching new copies of sequence sets.

Nullable. Unlimited length.

lookup_spec

Specially-formatted text representing how to cross-reference identifiers in this database with other databases.

Nullable. Unlimited length.

info_url

URL pointing to a human-readable resource giving more information about this sequence set.

Nullable. Varchar(255).

update_interval

Desired interval between updates, in seconds. A NULL value means no automatic updating. Defaults to daily.

Nullable. Integer.

is_public

Whether this sequence set should be visible to all users.

Not nullable. Default false.

RELATIONS ^

sequence_set_organisms

Type: has_many

Related object: Bio::Chado::Schema::Result::Mimosa::SequenceSetOrganism

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