Build.PL
examples/vntrs.bme
lib/Bio/Polloc.pm
lib/Bio/Polloc/Genome.pm
lib/Bio/Polloc/GroupCriteria.pm
lib/Bio/Polloc/GroupCriteria/operator.pm
lib/Bio/Polloc/GroupCriteria/operator/bool.pm
lib/Bio/Polloc/GroupCriteria/operator/cons.pm
lib/Bio/Polloc/GroupCriteria/operator/num.pm
lib/Bio/Polloc/GroupCriteria/operator/seq.pm
lib/Bio/Polloc/LociGroup.pm
lib/Bio/Polloc/Locus/amplicon.pm
lib/Bio/Polloc/Locus/composition.pm
lib/Bio/Polloc/Locus/crispr.pm
lib/Bio/Polloc/Locus/extend.pm
lib/Bio/Polloc/Locus/generic.pm
lib/Bio/Polloc/Locus/pattern.pm
lib/Bio/Polloc/Locus/repeat.pm
lib/Bio/Polloc/LocusI.pm
lib/Bio/Polloc/LocusIO.pm
lib/Bio/Polloc/LocusIO/gff3.pm
lib/Bio/Polloc/Polloc/Config.pm
lib/Bio/Polloc/Polloc/Error.pm
lib/Bio/Polloc/Polloc/IO.pm
lib/Bio/Polloc/Polloc/Root.pm
lib/Bio/Polloc/Polloc/Version.pm
lib/Bio/Polloc/Rule/boolean.pm
lib/Bio/Polloc/Rule/composition.pm
lib/Bio/Polloc/Rule/crispr.pm
lib/Bio/Polloc/Rule/pattern.pm
lib/Bio/Polloc/Rule/profile.pm
lib/Bio/Polloc/Rule/repeat.pm
lib/Bio/Polloc/Rule/tandemrepeat.pm
lib/Bio/Polloc/RuleI.pm
lib/Bio/Polloc/RuleIO.pm
lib/Bio/Polloc/RuleSet/cfg.pm
lib/Bio/Polloc/Typing/bandingPattern.pm
lib/Bio/Polloc/Typing/bandingPattern/amplification.pm
lib/Bio/Polloc/TypingI.pm
lib/Bio/Polloc/TypingIO.pm
lib/Bio/Polloc/TypingIO/cfg.pm
LICENSE.txt
Makefile.PL
MANIFEST			This list of files
META.yml
README.md
README.txt
scripts/polloc_detect.pl
scripts/polloc_experiment.pl
scripts/polloc_gel.pl
scripts/polloc_group.pl
scripts/polloc_primers.pl
scripts/polloc_vntrs.pl
t/00-load/polloc.t
t/01-genomes/01-genome.t
t/02-rules/01-ruleio.t
t/02-rules/02-rulei.t
t/02-rules/03-rule/crispr.t
t/02-rules/03-rule/pattern.t
t/02-rules/03-rule/repeat.t
t/02-rules/03-rule/tandemrepeat.t
t/03-loci/01-locusio.t
t/04-grouping/01-groupcriteria.t
t/05-typing/01-typingio.t
t/05-typing/02-typing.t
t/crispr_seq.fasta
t/loci.gff3
t/loci_out.gff3
t/loci_short.gff3
t/multi.fasta
t/repeats.fasta
t/repeats.gff3
t/vntrs.bme