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Luis M Rodríguez-R > Polloc-1.5.3b > scripts/polloc_group.pl

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AUTHOR ^

Luis M. Rodriguez-R < lmrodriguezr at gmail dot com >

DESCRIPTION ^

Groups loci listed in GFF version 3, and produces a CSV file with the IDs of the grouped loci (one line per group).

LICENSE ^

This script is distributed under the terms of The Artistic License. See LICENSE.txt for details.

SYNOPSIS ^

perl polloc_group.pl arguments

The arguments must be in the following order:

Configuration

The configuration file (a .bme or .cfg file).

Input GFF

A path to the GFF file containing the loci to be grouped.

Output CSV

A path to the CSV file to be generated.

Inseqs

All the following arguments will be treated as input files. Each file is assumed to contain a genome (that can contain one or more sequence) in [multi-]fasta format.

Run perl polloc_vntrs.pl without arguments to see the help message.

SEE ALSO ^

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