Luis M. Rodriguez-R < lmrodriguezr at gmail dot com >
Groups loci listed in GFF version 3, and produces a CSV file with the IDs of the grouped loci (one line per group).
This script is distributed under the terms of The Artistic License. See LICENSE.txt for details.
perl polloc_group.pl arguments
The arguments must be in the following order:
The configuration file (a .bme or .cfg file).
A path to the GFF file containing the loci to be grouped.
A path to the CSV file to be generated.
All the following arguments will be treated as input files. Each file is assumed to contain a genome (that can contain one or more sequence) in [multi-]fasta format.
perl polloc_vntrs.pl without arguments to see the help message.