# This file was automatically generated by Dist::Zilla::Plugin::Manifest v5.043.
LICENSE
MANIFEST
META.json
META.yml
Makefile.PL
README.md
bin/clipseqtools
bin/clipseqtools-compare
bin/clipseqtools-plot
bin/clipseqtools-preprocess
dist.ini
lib/CLIPSeqTools.pm
lib/CLIPSeqTools/App.pm
lib/CLIPSeqTools/App/all.pm
lib/CLIPSeqTools/App/cluster_size_and_score_distribution.pm
lib/CLIPSeqTools/App/conservation_distribution.pm
lib/CLIPSeqTools/App/count_reads_on_genic_elements.pm
lib/CLIPSeqTools/App/distribution_on_genic_elements.pm
lib/CLIPSeqTools/App/distribution_on_introns_exons.pm
lib/CLIPSeqTools/App/export_bed.pm
lib/CLIPSeqTools/App/genome_coverage.pm
lib/CLIPSeqTools/App/genomic_distribution.pm
lib/CLIPSeqTools/App/nmer_enrichment_over_shuffled.pm
lib/CLIPSeqTools/App/nucleotide_composition.pm
lib/CLIPSeqTools/App/reads_long_gaps_size_distribution.pm
lib/CLIPSeqTools/App/size_distribution.pm
lib/CLIPSeqTools/CompareApp.pm
lib/CLIPSeqTools/CompareApp/all.pm
lib/CLIPSeqTools/CompareApp/compare_counts.pm
lib/CLIPSeqTools/CompareApp/join_tables.pm
lib/CLIPSeqTools/CompareApp/libraries_overlap_stats.pm
lib/CLIPSeqTools/CompareApp/libraries_relative_read_density.pm
lib/CLIPSeqTools/PlotApp.pm
lib/CLIPSeqTools/PlotApp/cluster_size_and_score_distribution.pm
lib/CLIPSeqTools/PlotApp/conservation_distribution.pm
lib/CLIPSeqTools/PlotApp/distribution_on_genic_elements.pm
lib/CLIPSeqTools/PlotApp/distribution_on_introns_exons.pm
lib/CLIPSeqTools/PlotApp/genomic_distribution.pm
lib/CLIPSeqTools/PlotApp/libraries_relative_read_density.pm
lib/CLIPSeqTools/PlotApp/nucleotide_composition.pm
lib/CLIPSeqTools/PlotApp/reads_long_gaps_size_distribution.pm
lib/CLIPSeqTools/PlotApp/scatterplot.pm
lib/CLIPSeqTools/PlotApp/size_distribution.pm
lib/CLIPSeqTools/PreprocessApp.pm
lib/CLIPSeqTools/PreprocessApp/all.pm
lib/CLIPSeqTools/PreprocessApp/annotate_with_conservation.pm
lib/CLIPSeqTools/PreprocessApp/annotate_with_deletions.pm
lib/CLIPSeqTools/PreprocessApp/annotate_with_file.pm
lib/CLIPSeqTools/PreprocessApp/annotate_with_genic_elements.pm
lib/CLIPSeqTools/PreprocessApp/cleanup_alignment.pm
lib/CLIPSeqTools/PreprocessApp/collapse_fastq.pm
lib/CLIPSeqTools/PreprocessApp/cut_adaptor.pm
lib/CLIPSeqTools/PreprocessApp/sam_to_sqlite.pm
lib/CLIPSeqTools/PreprocessApp/star_alignment.pm
lib/CLIPSeqTools/PreprocessApp/trim_fastq.pm
lib/CLIPSeqTools/Role/Option/Genes.pm
lib/CLIPSeqTools/Role/Option/Library.pm
lib/CLIPSeqTools/Role/Option/OutputPrefix.pm
lib/CLIPSeqTools/Role/Option/Plot.pm
lib/CLIPSeqTools/Role/Option/ReferenceLibrary.pm
lib/CLIPSeqTools/Role/Option/Transcripts.pm
lib/CLIPSeqTools/Tutorial/Details.pod
lib/CLIPSeqTools/Tutorial/Introduction.pod
t/data/alignments1.db
t/data/alignments2.db
t/data/transcripts.gtf