CLIPSeqTools::PreprocessApp::star_alignment - Do reads alignment with STAR.
clipseqtools-preprocess star_alignment [options/parameters]
Do reads alignment with STAR.
Input. --fastq <Str> FastQ file with the reads. --star_genome <Str> directory with STAR genome index Output --o_prefix <Str> output path prefix. Script will create and add extension to path. [Default: ./] Other options. --star_path <Str> path to STAR executable. [Default: STAR]. --threads <Int> number of threads to use. [Default: 4]. -v --verbose print progress lines and extra information. -h -? --usage --help print help message
To install CLIPSeqTools, copy and paste the appropriate command in to your terminal.
cpanm
cpanm CLIPSeqTools
CPAN shell
perl -MCPAN -e shell install CLIPSeqTools
For more information on module installation, please visit the detailed CPAN module installation guide.