Miguel Pignatelli > Bio-LITE-Taxonomy-RDP-0.03 > Bio::LITE::Taxonomy::RDP

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Module Version: 0.03   Source  

NAME ^

Bio::LITE::Taxonomy::RDP - Lightweight and efficient RDP taxonomic manager

SYNOPSIS ^

  use Bio::LITE::Taxonomy::RDP;

  my $taxRDP = Bio::LITE::Taxonomy::RDP->new (
                                              bergeyXML => "/path/to/BergeyTrainingTree.xml",
                                             );

  my  @tax = $taxRDP->get_taxonomy (22075);

  my $level = $taxRDP->get_level_from_name("Bacillaceae 1");

DESCRIPTION ^

This module provides easy and efficient access to the RDP taxonomy with minimal dependencies and without intermediary databases.

This module is not part of the Bioperl bundle.

SEE ALSO ^

Bio::Taxonomy

Bio::Taxonomy::NCBI

AUTHOR ^

Miguel Pignatelli

Any comments or suggestions should be addressed to emepyc@gmail.com

LICENSE ^

Copyright 2009 Miguel Pignatelli, all rights reserved.

This library is free software; you may redistribute it and/or modify it under the same terms as Perl itself.

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