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Data-Babel-1.11_03
River stage zero No dependents
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Changes for version 1.11_03 - 2013-06-13

  • Bug fixes
  • Fixed more tests that failed because of hash key randomization in 5.18. thanks again to CPAN testers for finding this problem!

Changes for version 1.11_02 - 2013-06-12

  • Bug fixes
  • Fixed tests that failed because of hash key randomization in 5.18. thanks to CPAN testers for finding this problem!

Changes for version 1.11_01 - 2013-06-11

  • Bug fixes
  • in 'validate', check for unmatched ids has to be case insensitive because MySQL does case intensive comparisons, e.g., searching for 'htt' as gene_symbol
  • detect isolated IdTypes, ie, IdTypes not contained in any MapTable. previously, load_implicit_masters would generate illegal empty query New features
  • can specify history in IdType, rather than just in Master
  • new 'show_schema_graph' method Deleted vestigal logging code, mostly from Data::Babel::Base

Changes for version 1.10_07 - 2012-11-30

  • RC2 for 1.10 New features
  • expanded 'validate' method to accept output_idtypes Bug fixes
  • updated dependencies. should have been done earlier. Class::AutoDB was 1.20 which predates bug fix for redispatch of UNIVERSAL methods on Oid to real object. this caused FAILs in 040 and 050 series, which are the only tests that setup Babel in one script, then do extensive tests in other scripts. thanks to CPAN testers for finding this problem!

Changes for version 1.10_06 - 2012-11-25

  • RC1 for 1.10 New features
  • 'validate' method
  • 'validate' option for 'translate' and 'count' Bug fixes
  • lingering bug in 098.example. test was calling example script with wrong Perl interpreter and without -Mblib. thanks to CPAN smoke testers for finding this bug!!

Changes for version 1.10_05 - 2012-11-22

  • New features
  • 'translate' and 'count' handle histories Further refactored 04x series in preparation for histories and 'validate'
  • 04x subtests can do filter
  • 042.filter removed from distribution

Changes for version 1.10_04 - 2012-11-18

  • Only changes are to tests Refactored 04x series in preparation for histories and 'validate'
  • 04x subtests can test 'translate' or 'count'
  • 044.count removed from distribution Refactored 05x series in preparation for histories and 'validate'
  • 000 subtest creates all graph types and db types
  • other subtests test specific features against db created by 000
  • subtests can test 'translate' or 'count' w/ and w/o filters
  • 06x series merged into 05x as 'basecalc' db type and removed from distribution

Changes for version 1.10_03 - 2012-09-30

  • New features
  • internal id types
  • 'load_implicit_masters' method

Changes for version 1.10_02 - 2012-09-26

  • New features
  • Improved semantics for undefs in filters
  • 'count' method Bug fixes
  • 'translate' with empty input_ids would sometimes return NULL id

Changes for version 1.10_01 - 2012-08-25

  • New features
  • filters - new arg to 'translate' Bug fixes
  • 'translate' with empty input_ids. was generating illegal SQL, now returns empty table
  • examples/babel.pl used deprecated qw(...) as parentheses. should have been fixed in 1.02. sorry

Modules

Data::Babel
Translator for biological identifiers

Provides

Data::Babel::Base
in lib/Data/Babel/Base.pm
Data::Babel::Config
in lib/Data/Babel/Config.pm
Data::Babel::HAH_MultiValued
in lib/Data/Babel/HAH_MultiValued.pm
Data::Babel::HAH_MultiValued::helper
in lib/Data/Babel/HAH_MultiValued.pm
Data::Babel::HAH_MultiValued::tie
in lib/Data/Babel/HAH_MultiValued.pm
Data::Babel::IdType
in lib/Data/Babel/IdType.pm
Data::Babel::MapTable
in lib/Data/Babel/MapTable.pm
Data::Babel::Master
in lib/Data/Babel/Master.pm

Examples

Other files