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Oliver Ebenhöh > Bio-Metabolic-0.07 > Bio::Metabolic::Dynamics::Network

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Module Version: 0.06   Source  

Method time_derivative

This method returns a Math::Symbolic tree representing a function which determines the temporal change of the concentration of the substrate passed as the argument. This function is determined by the reaction rates.

Method ODEs

This method returns an array of Math::Symbolic trees. One for each substrate. The optional argument can be a Bio::Metabolic::Substrate::Cluster, an arrayref or an array of Bio::Metabolic::Substrate objects. If no argument is specified, it defaults to what the method substrates() returns.

Method mfile

Dumps a strong which can be used as an mfile for Matlab. The optional argument can be a Bio::Metabolic::Substrate::Cluster, an arrayref or an array of Bio::Metabolic::Substrate objects. If no argument is specified, it defaults to what the method substrates() returns.

The corresponding substrate concentrations are considered to be integration variables.

All parameters within the participating reactions must have a value. The method croaks if one parameter value is not defined.

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