Li Shen > diffReps-1.55.2

diffReps-1.55.2

This Release diffReps-1.55.2  [Download] [Browse 05 Sep 2013
Latest Release diffReps-1.55.3  [Download] [Browse 12 Sep 2013
Links Discussion Forum ] [ View/Report Bugs ] [ Dependencies ] [ Other Tools ]
CPAN Testers PASS (162)   [ View Reports ] [ Perl/Platform Version Matrix ]
Rating      (0 Reviews) [ Rate this distribution ]
License unknown
Special Files
Changes
CREDITS
Makefile.PL
MANIFEST
META.yml
README

Modules

MyBioinfo::Common Commonly used Perl subroutines for my bioinformatics work.     0.61
MyBioinfo::Math Math routines used for bioinformatics.     0.11
MyBioinfo::NBTest methods to perform negative binomial tests.     0.50
MyShortRead::ChromBed A perl class to deal with single chromosome BED file.     1.00
MyShortRead::MyShortRead My Perl library to deal with nextgen short read data.     1.00
MyShortRead::SRBed A perl class to deal with a short read dataset in BED file.     1.00
PJ::Database::Root Perl extension for genomic annotations     1.00
PJ::Genome Module for convenient access to genome statistics, such as chromosome lengths.     0.10
diffReps::ChromaModSite     1.122
diffReps::DiffRes class to store and manipulate differential sites. diffReps::ClustList - class to deal with a cluster of differential sites(hotspots).     1.11

Documentation

diffReps::SlideWindow class to deal with a sliding window. diffReps::ChromaModSite - class to deal with chromatin modification site, inherited from SlideWindow. diffReps::RegionList - class for a list of modification regio