Robert Buels > Bio-Chado-Schema-0.20000 > Bio::Chado::Schema::Result::Companalysis::Analysis

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Module Version: 0.20000   Source  

NAME ^

Bio::Chado::Schema::Result::Companalysis::Analysis

DESCRIPTION ^

An analysis is a particular type of a computational analysis; it may be a blast of one sequence against another, or an all by all blast, or a different kind of analysis altogether. It is a single unit of computation.

ACCESSORS ^

analysis_id

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'analysis_analysis_id_seq'

name

  data_type: 'varchar'
  is_nullable: 1
  size: 255

A way of grouping analyses. This should be a handy short identifier that can help people find an analysis they want. For instance "tRNAscan", "cDNA", "FlyPep", "SwissProt", and it should not be assumed to be unique. For instance, there may be lots of separate analyses done against a cDNA database.

description

  data_type: 'text'
  is_nullable: 1

program

  data_type: 'varchar'
  is_nullable: 0
  size: 255

Program name, e.g. blastx, blastp, sim4, genscan.

programversion

  data_type: 'varchar'
  is_nullable: 0
  size: 255

Version description, e.g. TBLASTX 2.0MP-WashU [09-Nov-2000].

algorithm

  data_type: 'varchar'
  is_nullable: 1
  size: 255

Algorithm name, e.g. blast.

sourcename

  data_type: 'varchar'
  is_nullable: 1
  size: 255

Source name, e.g. cDNA, SwissProt.

sourceversion

  data_type: 'varchar'
  is_nullable: 1
  size: 255

sourceuri

  data_type: 'text'
  is_nullable: 1

This is an optional, permanent URL or URI for the source of the analysis. The idea is that someone could recreate the analysis directly by going to this URI and fetching the source data (e.g. the blast database, or the training model).

timeexecuted

  data_type: 'timestamp'
  default_value: current_timestamp
  is_nullable: 0
  original: {default_value => \"now()"}

RELATIONS ^

analysisfeatures

Type: has_many

Related object: Bio::Chado::Schema::Result::Companalysis::Analysisfeature

analysisprops

Type: has_many

Related object: Bio::Chado::Schema::Result::Companalysis::Analysisprop

phylotrees

Type: has_many

Related object: Bio::Chado::Schema::Result::Phylogeny::Phylotree

quantifications

Type: has_many

Related object: Bio::Chado::Schema::Result::Mage::Quantification

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