Bio::Chado::Schema::Result::Pub::Pub
A documented provenance artefact - publications, documents, personal communication.
data_type: 'integer' is_auto_increment: 1 is_nullable: 0 sequence: 'pub_pub_id_seq'
data_type: 'text' is_nullable: 1
Descriptive general heading.
data_type: 'text' is_nullable: 1
Title of part if one of a series.
data_type: 'varchar' is_nullable: 1 size: 255
data_type: 'varchar' is_nullable: 1 size: 255
Full name of (journal) series.
data_type: 'varchar' is_nullable: 1 size: 255
data_type: 'varchar' is_nullable: 1 size: 255
data_type: 'varchar' is_nullable: 1 size: 255
Page number range[s], e.g. 457--459, viii + 664pp, lv--lvii.
data_type: 'varchar' is_nullable: 1 size: 255
data_type: 'text' is_nullable: 0
data_type: 'integer' is_foreign_key: 1 is_nullable: 0
The type of the publication (book, journal, poem, graffiti, etc). Uses pub cv.
data_type: 'boolean' default_value: false is_nullable: 1
data_type: 'varchar' is_nullable: 1 size: 255
data_type: 'varchar' is_nullable: 1 size: 255
Type: has_many
Related object: Bio::Chado::Schema::Result::CellLine::CellLineCvterm
Type: has_many
Related object: Bio::Chado::Schema::Result::CellLine::CellLineFeature
Type: has_many
Related object: Bio::Chado::Schema::Result::CellLine::CellLineLibrary
Type: has_many
Related object: Bio::Chado::Schema::Result::CellLine::CellLinepropPub
Type: has_many
Related object: Bio::Chado::Schema::Result::CellLine::CellLinePub
Type: has_many
Related object: Bio::Chado::Schema::Result::CellLine::CellLineSynonym
Type: has_many
Related object: Bio::Chado::Schema::Result::Expression::ExpressionPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvterm
Type: has_many
Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Expression::FeatureExpression
Type: has_many
Related object: Bio::Chado::Schema::Result::Sequence::FeaturelocPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Map::FeaturemapPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Sequence::FeaturepropPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Sequence::FeaturePub
Type: has_many
Related object: Bio::Chado::Schema::Result::Sequence::FeatureRelationshippropPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Sequence::FeatureRelationshipPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Sequence::FeatureSynonym
Type: has_many
Related object: Bio::Chado::Schema::Result::Library::LibraryCvterm
Type: has_many
Related object: Bio::Chado::Schema::Result::Library::LibrarypropPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Library::LibraryPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Library::LibrarySynonym
Type: has_many
Related object: Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Genetic::Phendesc
Type: has_many
Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparison
Type: has_many
Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparisonCvterm
Type: has_many
Related object: Bio::Chado::Schema::Result::Genetic::Phenstatement
Type: has_many
Related object: Bio::Chado::Schema::Result::Phylogeny::PhylonodePub
Type: has_many
Related object: Bio::Chado::Schema::Result::Phylogeny::PhylotreePub
Type: has_many
Related object: Bio::Chado::Schema::Result::Project::ProjectPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Mage::Protocol
Type: belongs_to
Related object: Bio::Chado::Schema::Result::Cv::Cvterm
Type: has_many
Related object: Bio::Chado::Schema::Result::Pub::Pubauthor
Type: has_many
Related object: Bio::Chado::Schema::Result::Pub::PubDbxref
Type: has_many
Related object: Bio::Chado::Schema::Result::Pub::Pubprop
Type: has_many
Related object: Bio::Chado::Schema::Result::Pub::PubRelationship
Type: has_many
Related object: Bio::Chado::Schema::Result::Pub::PubRelationship
Type: has_many
Related object: Bio::Chado::Schema::Result::Stock::StockCvterm
Type: has_many
Related object: Bio::Chado::Schema::Result::Stock::StockpropPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Stock::StockPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Stock::StockRelationshipCvterm
Type: has_many
Related object: Bio::Chado::Schema::Result::Stock::StockRelationshipPub
Type: has_many
Related object: Bio::Chado::Schema::Result::Mage::Study
Usage: $set->create_pubprops({ baz => 2, foo => 'bar' });
Desc : convenience method to create pubprop properties using cvterms
from the ontology with the given name
Args : hashref of { propname => value, ...},
options hashref as:
{
autocreate => 0,
(optional) boolean, if passed, automatically create cv,
cvterm, and dbxref rows if one cannot be found for the
given pubprop name. Default false.
cv_name => cv.name to use for the given pubprops.
Defaults to 'pub_property',
db_name => db.name to use for autocreated dbxrefs,
default 'null',
dbxref_accession_prefix => optional, default
'autocreated:',
definitions => optional hashref of:
{ cvterm_name => definition,
}
to load into the cvterm table when autocreating cvterms
rank => force numeric rank. Be careful not to pass ranks that already exist
for the property type. The function will die in such case.
allow_duplicate_values => default false.
If true, allow duplicate instances of the same cvterm
and value in the properties of the pubprop. Duplicate
values will have different ranks.
}
Ret : hashref of { propname => new pubprop object }
