Robert Buels > Bio-Chado-Schema-0.20000 > Bio::Chado::Schema::Result::Pub::Pub

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Module Version: 0.20000   Source  

NAME ^

Bio::Chado::Schema::Result::Pub::Pub

DESCRIPTION ^

A documented provenance artefact - publications, documents, personal communication.

ACCESSORS ^

pub_id

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'pub_pub_id_seq'

title

  data_type: 'text'
  is_nullable: 1

Descriptive general heading.

volumetitle

  data_type: 'text'
  is_nullable: 1

Title of part if one of a series.

volume

  data_type: 'varchar'
  is_nullable: 1
  size: 255

series_name

  data_type: 'varchar'
  is_nullable: 1
  size: 255

Full name of (journal) series.

issue

  data_type: 'varchar'
  is_nullable: 1
  size: 255

pyear

  data_type: 'varchar'
  is_nullable: 1
  size: 255

pages

  data_type: 'varchar'
  is_nullable: 1
  size: 255

Page number range[s], e.g. 457--459, viii + 664pp, lv--lvii.

miniref

  data_type: 'varchar'
  is_nullable: 1
  size: 255

uniquename

  data_type: 'text'
  is_nullable: 0

type_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

The type of the publication (book, journal, poem, graffiti, etc). Uses pub cv.

is_obsolete

  data_type: 'boolean'
  default_value: false
  is_nullable: 1

publisher

  data_type: 'varchar'
  is_nullable: 1
  size: 255

pubplace

  data_type: 'varchar'
  is_nullable: 1
  size: 255

RELATIONS ^

cell_line_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::CellLine::CellLineCvterm

cell_line_features

Type: has_many

Related object: Bio::Chado::Schema::Result::CellLine::CellLineFeature

cell_line_libraries

Type: has_many

Related object: Bio::Chado::Schema::Result::CellLine::CellLineLibrary

cell_lineprop_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::CellLine::CellLinepropPub

cell_line_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::CellLine::CellLinePub

cell_line_synonyms

Type: has_many

Related object: Bio::Chado::Schema::Result::CellLine::CellLineSynonym

expression_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Expression::ExpressionPub

feature_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvterm

feature_cvterm_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub

feature_expressions

Type: has_many

Related object: Bio::Chado::Schema::Result::Expression::FeatureExpression

featureloc_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeaturelocPub

featuremap_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Map::FeaturemapPub

featureprop_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeaturepropPub

feature_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeaturePub

feature_relationshipprop_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureRelationshippropPub

feature_relationship_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureRelationshipPub

feature_synonyms

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureSynonym

library_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::Library::LibraryCvterm

libraryprop_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Library::LibrarypropPub

library_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Library::LibraryPub

library_synonyms

Type: has_many

Related object: Bio::Chado::Schema::Result::Library::LibrarySynonym

nd_experiment_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentPub

phendescs

Type: has_many

Related object: Bio::Chado::Schema::Result::Genetic::Phendesc

phenotype_comparisons

Type: has_many

Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparison

phenotype_comparison_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparisonCvterm

phenstatements

Type: has_many

Related object: Bio::Chado::Schema::Result::Genetic::Phenstatement

phylonode_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Phylogeny::PhylonodePub

phylotree_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Phylogeny::PhylotreePub

project_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Project::ProjectPub

protocols

Type: has_many

Related object: Bio::Chado::Schema::Result::Mage::Protocol

type

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Cv::Cvterm

pubauthors

Type: has_many

Related object: Bio::Chado::Schema::Result::Pub::Pubauthor

pub_dbxrefs

Type: has_many

Related object: Bio::Chado::Schema::Result::Pub::PubDbxref

pubprops

Type: has_many

Related object: Bio::Chado::Schema::Result::Pub::Pubprop

pub_relationship_objects

Type: has_many

Related object: Bio::Chado::Schema::Result::Pub::PubRelationship

pub_relationship_subjects

Type: has_many

Related object: Bio::Chado::Schema::Result::Pub::PubRelationship

stock_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::Stock::StockCvterm

stockprop_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Stock::StockpropPub

stock_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Stock::StockPub

stock_relationship_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::Stock::StockRelationshipCvterm

stock_relationship_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Stock::StockRelationshipPub

studies

Type: has_many

Related object: Bio::Chado::Schema::Result::Mage::Study

create_pubprops

  Usage: $set->create_pubprops({ baz => 2, foo => 'bar' });
  Desc : convenience method to create pubprop properties using cvterms
          from the ontology with the given name
  Args : hashref of { propname => value, ...},
         options hashref as:
          {
            autocreate => 0,
               (optional) boolean, if passed, automatically create cv,
               cvterm, and dbxref rows if one cannot be found for the
               given pubprop name.  Default false.

            cv_name => cv.name to use for the given pubprops.
                       Defaults to 'pub_property',

            db_name => db.name to use for autocreated dbxrefs,
                       default 'null',

            dbxref_accession_prefix => optional, default
                                       'autocreated:',
            definitions => optional hashref of:
                { cvterm_name => definition,
                }
             to load into the cvterm table when autocreating cvterms

             rank => force numeric rank. Be careful not to pass ranks that already exist
                     for the property type. The function will die in such case.

             allow_duplicate_values => default false.
                If true, allow duplicate instances of the same cvterm
                and value in the properties of the pubprop.  Duplicate
                values will have different ranks.
          }
  Ret  : hashref of { propname => new pubprop object }
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