Robert Buels > Bio-Chado-Schema-0.20000 > Bio::Chado::Schema::Result::Stock::StockDbxref

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Module Version: 0.20000   Source  

NAME ^

Bio::Chado::Schema::Result::Stock::StockDbxref

DESCRIPTION ^

stock_dbxref links a stock to dbxrefs. This is for secondary identifiers; primary identifiers should use stock.dbxref_id.

ACCESSORS ^

stock_dbxref_id

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'stock_dbxref_stock_dbxref_id_seq'

stock_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

dbxref_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

is_current

  data_type: 'boolean'
  default_value: true
  is_nullable: 0

The is_current boolean indicates whether the linked dbxref is the current -official- dbxref for the linked stock.

RELATIONS ^

dbxref

Type: belongs_to

Related object: Bio::Chado::Schema::Result::General::Dbxref

stock

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Stock::Stock

stock_dbxrefprops

Type: has_many

Related object: Bio::Chado::Schema::Result::Stock::StockDbxrefprop

create_stock_dbxrefprops

  Usage: $set->create_stock_dbxrefprops({ baz => 2, foo => 'bar' });
  Desc : convenience method to create stock_dbxref properties using cvterms
          from the ontology with the given name
  Args : hashref of { propname => value, ...},
         options hashref as:
          {
            autocreate => 0,
               (optional) boolean, if passed, automatically create cv,
               cvterm, and dbxref rows if one cannot be found for the
               given stock_dbxrefprop name.  Default false.

            cv_name => cv.name to use for the given stock_dbxrefprops.
                       Defaults to 'stock_dbxref_property',

            db_name => db.name to use for autocreated dbxrefs,
                       default 'null',

            dbxref_accession_prefix => optional, default
                                       'autocreated:',
            definitions => optional hashref of:
                { cvterm_name => definition,
                }
             to load into the cvterm table when autocreating cvterms

             rank => force numeric rank. Be careful not to pass ranks that already exist
                     for the property type. The function will die in such case.

             allow_duplicate_values => default false.
                If true, allow duplicate instances of the same stock_dbxref
                and value in the properties of the stock_dbxref.  Duplicate
                values will have different ranks.
          }
  Ret  : hashref of { propname => new stock_dbxrefprop object }
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