Bio::Chado::Schema::Result::Pub::Pub
A documented provenance artefact - publications, documents, personal communication.
data_type: 'integer' is_auto_increment: 1 is_nullable: 0 sequence: 'pub_pub_id_seq'
data_type: 'text' is_nullable: 1
Descriptive general heading.
Title of part if one of a series.
data_type: 'varchar' is_nullable: 1 size: 255
Full name of (journal) series.
Page number range[s], e.g. 457--459, viii + 664pp, lv--lvii.
data_type: 'text' is_nullable: 0
data_type: 'integer' is_foreign_key: 1 is_nullable: 0
The type of the publication (book, journal, poem, graffiti, etc). Uses pub cv.
data_type: 'boolean' default_value: false is_nullable: 1
Type: has_many
Related object: Bio::Chado::Schema::Result::CellLine::CellLineCvterm
Related object: Bio::Chado::Schema::Result::CellLine::CellLineFeature
Related object: Bio::Chado::Schema::Result::CellLine::CellLineLibrary
Related object: Bio::Chado::Schema::Result::CellLine::CellLinepropPub
Related object: Bio::Chado::Schema::Result::CellLine::CellLinePub
Related object: Bio::Chado::Schema::Result::CellLine::CellLineSynonym
Related object: Bio::Chado::Schema::Result::Expression::ExpressionPub
Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvterm
Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub
Related object: Bio::Chado::Schema::Result::Expression::FeatureExpression
Related object: Bio::Chado::Schema::Result::Sequence::FeaturelocPub
Related object: Bio::Chado::Schema::Result::Map::FeaturemapPub
Related object: Bio::Chado::Schema::Result::Sequence::FeaturepropPub
Related object: Bio::Chado::Schema::Result::Sequence::FeaturePub
Related object: Bio::Chado::Schema::Result::Sequence::FeatureRelationshippropPub
Related object: Bio::Chado::Schema::Result::Sequence::FeatureRelationshipPub
Related object: Bio::Chado::Schema::Result::Sequence::FeatureSynonym
Related object: Bio::Chado::Schema::Result::Library::LibraryCvterm
Related object: Bio::Chado::Schema::Result::Library::LibrarypropPub
Related object: Bio::Chado::Schema::Result::Library::LibraryPub
Related object: Bio::Chado::Schema::Result::Library::LibrarySynonym
Related object: Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentPub
Related object: Bio::Chado::Schema::Result::Genetic::Phendesc
Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparison
Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparisonCvterm
Related object: Bio::Chado::Schema::Result::Genetic::Phenstatement
Related object: Bio::Chado::Schema::Result::Phylogeny::PhylonodePub
Related object: Bio::Chado::Schema::Result::Phylogeny::PhylotreePub
Related object: Bio::Chado::Schema::Result::Project::ProjectPub
Related object: Bio::Chado::Schema::Result::Mage::Protocol
Type: belongs_to
Related object: Bio::Chado::Schema::Result::Cv::Cvterm
Related object: Bio::Chado::Schema::Result::Pub::Pubauthor
Related object: Bio::Chado::Schema::Result::Pub::PubDbxref
Related object: Bio::Chado::Schema::Result::Pub::Pubprop
Related object: Bio::Chado::Schema::Result::Pub::PubRelationship
Related object: Bio::Chado::Schema::Result::Stock::StockCvterm
Related object: Bio::Chado::Schema::Result::Stock::StockpropPub
Related object: Bio::Chado::Schema::Result::Stock::StockPub
Related object: Bio::Chado::Schema::Result::Stock::StockRelationshipCvterm
Related object: Bio::Chado::Schema::Result::Stock::StockRelationshipPub
Related object: Bio::Chado::Schema::Result::Mage::Study
Usage: $set->create_pubprops({ baz => 2, foo => 'bar' }); Desc : convenience method to create pubprop properties using cvterms from the ontology with the given name Args : hashref of { propname => value, ...}, options hashref as: { autocreate => 0, (optional) boolean, if passed, automatically create cv, cvterm, and dbxref rows if one cannot be found for the given pubprop name. Default false. cv_name => cv.name to use for the given pubprops. Defaults to 'pub_property', db_name => db.name to use for autocreated dbxrefs, default 'null', dbxref_accession_prefix => optional, default 'autocreated:', definitions => optional hashref of: { cvterm_name => definition, } to load into the cvterm table when autocreating cvterms rank => force numeric rank. Be careful not to pass ranks that already exist for the property type. The function will die in such case. allow_duplicate_values => default false. If true, allow duplicate instances of the same cvterm and value in the properties of the pubprop. Duplicate values will have different ranks. } Ret : hashref of { propname => new pubprop object }
To install Bio::Chado::Schema, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Chado::Schema
CPAN shell
perl -MCPAN -e shell install Bio::Chado::Schema
For more information on module installation, please visit the detailed CPAN module installation guide.