Robert Olson > Bio-KBase-0.06

Bio-KBase-0.06

This Release Bio-KBase-0.06  [Download] [Browse 15 Aug 2012
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CPAN Testers PASS (29)   UNKNOWN (51)   [ View Reports ] [ Perl/Platform Version Matrix ]
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License CC0 License
Special Files
Makefile.PL
META.json

Modules

Bio::KBase DOE Systems Biology Knowledgebase     0.05
Bio::KBase::CDMI::CDMI      
Bio::KBase::CDMI::CDMIClient      
Bio::KBase::CDMI::CDMILoader      
Bio::KBase::CDMI::CDMI_APIImpl      
Bio::KBase::CDMI::CDMI_EntityAPIImpl      
Bio::KBase::CDMI::Client      
Bio::KBase::CDMI::FamilyType      
Bio::KBase::CDMI::Service      
Bio::KBase::CDMI::Sources      
Bio::KBase::Exceptions      
Bio::KBase::GenomeAnnotation::Client      
Bio::KBase::GenomeAnnotation::GenomeAnnotationImpl      
Bio::KBase::GenomeAnnotation::Service      
Bio::KBase::IDServer::Client      
Bio::KBase::IDServer::Impl      
Bio::KBase::IDServer::Service      
Bio::KBase::InvocationService::Client      
Bio::KBase::InvocationService::InvocationServiceImpl      
Bio::KBase::InvocationService::PipelineGrammar      
Bio::KBase::InvocationService::Service      
Bio::KBase::InvocationService::ValidCommands      
Bio::KBase::Utilities::ScriptThing      
CDMIUtils      

Documentation

Bio::KBase::CDMI::ServiceContext  
Bio::KBase::GenomeAnnotation::ServiceContext  
Bio::KBase::IDServer::ServiceContext  
Bio::KBase::InvocationService::ServiceContext  
CDMI_API  
CDMI_EntityAPI  
GenomeAnnotation  
IDServerAPI  
InvocationService  
er_scripts/all_entities_AlignmentTree  
er_scripts/all_entities_AlleleFrequency  
er_scripts/all_entities_Annotation  
er_scripts/all_entities_Assay  
er_scripts/all_entities_AtomicRegulon  
er_scripts/all_entities_Attribute  
er_scripts/all_entities_Biomass  
er_scripts/all_entities_BiomassCompound  
er_scripts/all_entities_Compartment  
er_scripts/all_entities_Complex  
er_scripts/all_entities_Compound  
er_scripts/all_entities_Contig  
er_scripts/all_entities_ContigChunk  
er_scripts/all_entities_ContigSequence  
er_scripts/all_entities_CoregulatedSet  
er_scripts/all_entities_Diagram  
er_scripts/all_entities_EcNumber  
er_scripts/all_entities_Experiment  
er_scripts/all_entities_Family  
er_scripts/all_entities_Feature  
er_scripts/all_entities_Genome  
er_scripts/all_entities_Identifier  
er_scripts/all_entities_Locality  
er_scripts/all_entities_Media  
er_scripts/all_entities_Model  
er_scripts/all_entities_ModelCompartment  
er_scripts/all_entities_OTU  
er_scripts/all_entities_ObservationalUnit  
er_scripts/all_entities_PairSet  
er_scripts/all_entities_Pairing  
er_scripts/all_entities_ProbeSet  
er_scripts/all_entities_ProteinSequence  
er_scripts/all_entities_Publication  
er_scripts/all_entities_Reaction  
er_scripts/all_entities_ReactionRule  
er_scripts/all_entities_Reagent  
er_scripts/all_entities_Requirement  
er_scripts/all_entities_Role  
er_scripts/all_entities_SSCell  
er_scripts/all_entities_SSRow  
er_scripts/all_entities_Scenario  
er_scripts/all_entities_Source  
er_scripts/all_entities_StudyExperiment  
er_scripts/all_entities_Subsystem  
er_scripts/all_entities_SubsystemClass  
er_scripts/all_entities_TaxonomicGrouping  
er_scripts/all_entities_Trait  
er_scripts/all_entities_Variant  
er_scripts/all_entities_Variation  
er_scripts/get_entity_AlignmentTree  
er_scripts/get_entity_AlleleFrequency  
er_scripts/get_entity_Annotation  
er_scripts/get_entity_Assay  
er_scripts/get_entity_AtomicRegulon  
er_scripts/get_entity_Attribute  
er_scripts/get_entity_Biomass  
er_scripts/get_entity_BiomassCompound  
er_scripts/get_entity_Compartment  
er_scripts/get_entity_Complex  
er_scripts/get_entity_Compound  
er_scripts/get_entity_Contig  
er_scripts/get_entity_ContigChunk  
er_scripts/get_entity_ContigSequence  
er_scripts/get_entity_CoregulatedSet  
er_scripts/get_entity_Diagram  
er_scripts/get_entity_EcNumber  
er_scripts/get_entity_Experiment  
er_scripts/get_entity_Family  
er_scripts/get_entity_Feature  
er_scripts/get_entity_Genome  
er_scripts/get_entity_Identifier  
er_scripts/get_entity_Locality  
er_scripts/get_entity_Media  
er_scripts/get_entity_Model  
er_scripts/get_entity_ModelCompartment  
er_scripts/get_entity_OTU  
er_scripts/get_entity_ObservationalUnit  
er_scripts/get_entity_PairSet  
er_scripts/get_entity_Pairing  
er_scripts/get_entity_ProbeSet  
er_scripts/get_entity_ProteinSequence  
er_scripts/get_entity_Publication  
er_scripts/get_entity_Reaction  
er_scripts/get_entity_ReactionRule  
er_scripts/get_entity_Reagent  
er_scripts/get_entity_Requirement  
er_scripts/get_entity_Role  
er_scripts/get_entity_SSCell  
er_scripts/get_entity_SSRow  
er_scripts/get_entity_Scenario  
er_scripts/get_entity_Source  
er_scripts/get_entity_StudyExperiment  
er_scripts/get_entity_Subsystem  
er_scripts/get_entity_SubsystemClass  
er_scripts/get_entity_TaxonomicGrouping  
er_scripts/get_entity_Trait  
er_scripts/get_entity_Variant  
er_scripts/get_entity_Variation  
er_scripts/get_relationship_AffectsLevelOf  
er_scripts/get_relationship_Aligns  
er_scripts/get_relationship_Annotates  
er_scripts/get_relationship_Asserts  
er_scripts/get_relationship_AssertsFunctionFor  
er_scripts/get_relationship_Comprises  
er_scripts/get_relationship_Concerns  
er_scripts/get_relationship_Contains  
er_scripts/get_relationship_Controls  
er_scripts/get_relationship_DefinedBy  
er_scripts/get_relationship_Describes  
er_scripts/get_relationship_Determines  
er_scripts/get_relationship_DeterminesFunctionOf  
er_scripts/get_relationship_Displays  
er_scripts/get_relationship_Encompasses  
er_scripts/get_relationship_Formulated  
er_scripts/get_relationship_GeneratedLevelsFor  
er_scripts/get_relationship_HadResultsProducedBy  
er_scripts/get_relationship_HasAsExemplar  
er_scripts/get_relationship_HasAsSequence  
er_scripts/get_relationship_HasAsTerminus  
er_scripts/get_relationship_HasAssertedFunctionFrom  
er_scripts/get_relationship_HasAssertionFrom  
er_scripts/get_relationship_HasCompoundAliasFrom  
er_scripts/get_relationship_HasCoregulationWith  
er_scripts/get_relationship_HasDefaultLocation  
er_scripts/get_relationship_HasFunctional  
er_scripts/get_relationship_HasIndicatedSignalFrom  
er_scripts/get_relationship_HasLevelsFrom  
er_scripts/get_relationship_HasMember  
er_scripts/get_relationship_HasParticipant  
er_scripts/get_relationship_HasPresenceOf  
er_scripts/get_relationship_HasProposedLocationIn  
er_scripts/get_relationship_HasProteinMember  
er_scripts/get_relationship_HasReactionAliasFrom  
er_scripts/get_relationship_HasRealLocationIn  
er_scripts/get_relationship_HasRepresentativeOf  
er_scripts/get_relationship_HasResultsFor  
er_scripts/get_relationship_HasResultsIn  
er_scripts/get_relationship_HasRole  
er_scripts/get_relationship_HasSection  
er_scripts/get_relationship_HasStep  
er_scripts/get_relationship_HasTrait  
er_scripts/get_relationship_HasUnits  
er_scripts/get_relationship_HasUsage  
er_scripts/get_relationship_HasValueFor  
er_scripts/get_relationship_HasValueIn  
er_scripts/get_relationship_HasVariant  
er_scripts/get_relationship_HasVariation  
er_scripts/get_relationship_HasVariationIn  
er_scripts/get_relationship_Impacts  
er_scripts/get_relationship_Implements  
er_scripts/get_relationship_Imported  
er_scripts/get_relationship_Includes  
er_scripts/get_relationship_IncludesPart  
er_scripts/get_relationship_IncludesPartOf  
er_scripts/get_relationship_IndicatedLevelsFor  
er_scripts/get_relationship_IndicatesSignalFor  
er_scripts/get_relationship_Involves  
er_scripts/get_relationship_IsARequirementIn  
er_scripts/get_relationship_IsARequirementOf  
er_scripts/get_relationship_IsATopicOf  
er_scripts/get_relationship_IsAffectedIn  
er_scripts/get_relationship_IsAlignedBy  
er_scripts/get_relationship_IsAlignedIn  
er_scripts/get_relationship_IsAlignmentFor  
er_scripts/get_relationship_IsAnnotatedBy  
er_scripts/get_relationship_IsAssayOf  
er_scripts/get_relationship_IsAssayedBy  
er_scripts/get_relationship_IsBindingSiteFor  
er_scripts/get_relationship_IsBoundBy  
er_scripts/get_relationship_IsClassFor  
er_scripts/get_relationship_IsCollectedInto  
er_scripts/get_relationship_IsCollectionOf  
er_scripts/get_relationship_IsComponentOf  
er_scripts/get_relationship_IsComposedOf  
er_scripts/get_relationship_IsComprisedOf  
er_scripts/get_relationship_IsConfiguredBy  
er_scripts/get_relationship_IsConsistentTo  
er_scripts/get_relationship_IsConsistentWith  
er_scripts/get_relationship_IsContainedIn  
er_scripts/get_relationship_IsControlledUsing  
er_scripts/get_relationship_IsCoregulatedWith  
er_scripts/get_relationship_IsCoupledTo  
er_scripts/get_relationship_IsCoupledWith  
er_scripts/get_relationship_IsDefaultFor  
er_scripts/get_relationship_IsDefaultLocationOf  
er_scripts/get_relationship_IsDescribedBy  
er_scripts/get_relationship_IsDeterminedBy  
er_scripts/get_relationship_IsDisplayedOn  
er_scripts/get_relationship_IsDividedInto  
er_scripts/get_relationship_IsDivisionOf  
er_scripts/get_relationship_IsEncompassedIn  
er_scripts/get_relationship_IsExemplarOf  
er_scripts/get_relationship_IsFamilyFor  
er_scripts/get_relationship_IsFormedInto  
er_scripts/get_relationship_IsFormedOf  
er_scripts/get_relationship_IsFunctionalIn  
er_scripts/get_relationship_IsGroupFor  
er_scripts/get_relationship_IsImpactedBy  
er_scripts/get_relationship_IsImplementedBy  
er_scripts/get_relationship_IsInClass  
er_scripts/get_relationship_IsInGroup  
er_scripts/get_relationship_IsInPair  
er_scripts/get_relationship_IsInTaxa  
er_scripts/get_relationship_IsIncludedIn  
er_scripts/get_relationship_IsInstanceOf  
er_scripts/get_relationship_IsInstantiatedBy  
er_scripts/get_relationship_IsInvolvedIn  
er_scripts/get_relationship_IsLocated  
er_scripts/get_relationship_IsLocatedIn  
er_scripts/get_relationship_IsLocatedOn  
er_scripts/get_relationship_IsLocusFor  
er_scripts/get_relationship_IsManagedBy  
er_scripts/get_relationship_IsMemberOf  
er_scripts/get_relationship_IsModeledBy  
er_scripts/get_relationship_IsNamedBy  
er_scripts/get_relationship_IsOwnedBy  
er_scripts/get_relationship_IsOwnerOf  
er_scripts/get_relationship_IsPairOf  
er_scripts/get_relationship_IsPartOf  
er_scripts/get_relationship_IsParticipationOf  
er_scripts/get_relationship_IsPresentIn  
er_scripts/get_relationship_IsProjectedOnto  
er_scripts/get_relationship_IsProposedLocationOf  
er_scripts/get_relationship_IsProteinFor  
er_scripts/get_relationship_IsProteinMemberOf  
er_scripts/get_relationship_IsRealLocationOf  
er_scripts/get_relationship_IsReferencedBy  
er_scripts/get_relationship_IsRegulatedIn  
er_scripts/get_relationship_IsRegulatedSetOf  
er_scripts/get_relationship_IsRelevantFor  
er_scripts/get_relationship_IsRelevantTo  
er_scripts/get_relationship_IsRepresentedBy  
er_scripts/get_relationship_IsRepresentedIn  
er_scripts/get_relationship_IsRequiredBy  
er_scripts/get_relationship_IsRoleFor  
er_scripts/get_relationship_IsRoleOf  
er_scripts/get_relationship_IsRowOf  
er_scripts/get_relationship_IsSectionOf  
er_scripts/get_relationship_IsSequenceOf  
er_scripts/get_relationship_IsShownOn  
er_scripts/get_relationship_IsStepOf  
er_scripts/get_relationship_IsSubInstanceOf  
er_scripts/get_relationship_IsSubclassOf  
er_scripts/get_relationship_IsSummarizedBy  
er_scripts/get_relationship_IsSuperclassOf  
er_scripts/get_relationship_IsTargetOf  
er_scripts/get_relationship_IsTaxonomyOf  
er_scripts/get_relationship_IsTerminusFor  
er_scripts/get_relationship_IsTriggeredBy  
er_scripts/get_relationship_IsUsageOf  
er_scripts/get_relationship_IsUseOf  
er_scripts/get_relationship_IsUsedAs  
er_scripts/get_relationship_IsUsedBy  
er_scripts/get_relationship_IsUtilizedIn  
er_scripts/get_relationship_IsVariantOf  
er_scripts/get_relationship_IsVariedIn  
er_scripts/get_relationship_Manages  
er_scripts/get_relationship_Measures  
er_scripts/get_relationship_Models  
er_scripts/get_relationship_Names  
er_scripts/get_relationship_OperatesIn  
er_scripts/get_relationship_Overlaps  
er_scripts/get_relationship_ParticipatesAs  
er_scripts/get_relationship_ParticipatesIn  
er_scripts/get_relationship_ProducedResultsFor  
er_scripts/get_relationship_Produces  
er_scripts/get_relationship_ProjectsOnto  
er_scripts/get_relationship_Provided  
er_scripts/get_relationship_ReflectsStateOf  
er_scripts/get_relationship_Requires  
er_scripts/get_relationship_ResultsIn  
er_scripts/get_relationship_RunsByDefaultIn  
er_scripts/get_relationship_Shows  
er_scripts/get_relationship_Submitted  
er_scripts/get_relationship_SummarizedBy  
er_scripts/get_relationship_Summarizes  
er_scripts/get_relationship_Targets  
er_scripts/get_relationship_Triggers  
er_scripts/get_relationship_Uses  
er_scripts/get_relationship_UsesAliasForCompound  
er_scripts/get_relationship_UsesAliasForReaction  
er_scripts/get_relationship_UsesReference  
er_scripts/get_relationship_Validates  
er_scripts/get_relationship_WasDetermiedBy  
er_scripts/get_relationship_WasFormulatedBy  
er_scripts/get_relationship_WasGeneratedFrom  
er_scripts/get_relationship_WasImportedFrom  
er_scripts/get_relationship_WasProvidedBy  
er_scripts/get_relationship_WasSubmittedBy  
er_scripts/query_entity_AlignmentTree  
er_scripts/query_entity_AlleleFrequency  
er_scripts/query_entity_Annotation  
er_scripts/query_entity_Assay  
er_scripts/query_entity_AtomicRegulon  
er_scripts/query_entity_Attribute  
er_scripts/query_entity_Biomass  
er_scripts/query_entity_BiomassCompound  
er_scripts/query_entity_Compartment  
er_scripts/query_entity_Complex  
er_scripts/query_entity_Compound  
er_scripts/query_entity_Contig  
er_scripts/query_entity_ContigChunk  
er_scripts/query_entity_ContigSequence  
er_scripts/query_entity_CoregulatedSet  
er_scripts/query_entity_Diagram  
er_scripts/query_entity_EcNumber  
er_scripts/query_entity_Experiment  
er_scripts/query_entity_Family  
er_scripts/query_entity_Feature  
er_scripts/query_entity_Genome  
er_scripts/query_entity_Identifier  
er_scripts/query_entity_Locality  
er_scripts/query_entity_Media  
er_scripts/query_entity_Model  
er_scripts/query_entity_ModelCompartment  
er_scripts/query_entity_OTU  
er_scripts/query_entity_ObservationalUnit  
er_scripts/query_entity_PairSet  
er_scripts/query_entity_Pairing  
er_scripts/query_entity_ProbeSet  
er_scripts/query_entity_ProteinSequence  
er_scripts/query_entity_Publication  
er_scripts/query_entity_Reaction  
er_scripts/query_entity_ReactionRule  
er_scripts/query_entity_Reagent  
er_scripts/query_entity_Requirement  
er_scripts/query_entity_Role  
er_scripts/query_entity_SSCell  
er_scripts/query_entity_SSRow  
er_scripts/query_entity_Scenario  
er_scripts/query_entity_Source  
er_scripts/query_entity_StudyExperiment  
er_scripts/query_entity_Subsystem  
er_scripts/query_entity_SubsystemClass  
er_scripts/query_entity_TaxonomicGrouping  
er_scripts/query_entity_Trait  
er_scripts/query_entity_Variant  
er_scripts/query_entity_Variation  
scripts/all_roles_used_in_models  
scripts/all_roles_used_in_models_and_subsystems  
scripts/alleles_to_bp_locs  
scripts/alleles_to_traits  
scripts/atomic_regulons_to_fids  
scripts/close_genomes  
scripts/co_occurrence_evidence  
scripts/complexes_to_complex_data  
scripts/complexes_to_roles  
scripts/contigs_to_lengths  
scripts/contigs_to_md5s  
scripts/contigs_to_sequences  
scripts/corresponds  
scripts/dump_relationship  
scripts/equiv_sequence_assertions  
scripts/ermodel_to_text  
scripts/external_ids_to_kbase_ids  
scripts/fids_to_annotations  
scripts/fids_to_atomic_regulons  
scripts/fids_to_co_occurring_fids  
scripts/fids_to_coexpressed_fids  
scripts/fids_to_dna_sequences  
scripts/fids_to_feature_data  
scripts/fids_to_functions  
scripts/fids_to_genomes  
scripts/fids_to_literature  
scripts/fids_to_locations  
scripts/fids_to_protein_families  
scripts/fids_to_protein_sequences  
scripts/fids_to_proteins  
scripts/fids_to_regulon_data  
scripts/fids_to_roles  
scripts/fids_to_subsystem_data  
scripts/fids_to_subsystems  
scripts/genomes_to_contigs  
scripts/genomes_to_fids  
scripts/genomes_to_genome_data  
scripts/genomes_to_md5s  
scripts/genomes_to_subsystems  
scripts/genomes_to_taxonomies  
scripts/kbase_ids_to_external_ids  
scripts/locations_to_dna_sequences  
scripts/locations_to_fids  
scripts/md5s_to_genomes  
scripts/otu_members  
scripts/ous_with_trait  
scripts/protein_families_to_co_occurring_families  
scripts/protein_families_to_fids  
scripts/protein_families_to_functions  
scripts/protein_families_to_proteins  
scripts/proteins_to_fids  
scripts/proteins_to_functions  
scripts/proteins_to_literature  
scripts/proteins_to_protein_families  
scripts/proteins_to_roles  
scripts/proteins_to_sequences  
scripts/reaction_strings  
scripts/reactions_to_complexes  
scripts/region_to_alleles  
scripts/region_to_fids  
scripts/regulons_to_fids  
scripts/representative  
scripts/representative_sequences  
scripts/roles_to_complexes  
scripts/roles_to_fids  
scripts/roles_to_protein_families  
scripts/roles_to_proteins  
scripts/roles_to_subsystems  
scripts/subsystems_to_fids  
scripts/subsystems_to_genomes  
scripts/subsystems_to_roles  
scripts/subsystems_to_spreadsheets  
scripts/text_search  
scripts/traits_to_alleles