View on
MetaCPAN is shutting down
For details read Perl NOC. After June 25th this page will redirect to
Robert Olson > Bio-KBase-0.06 > er_scripts/all_entities_OTU


Annotate this POD


New  1
Open  0
View/Report Bugs

all_entities_OTU ^

Return all instances of the OTU entity.

An OTU (Organism Taxonomic Unit) is a named group of related genomes.


    all_entities_OTU -a 

would retrieve all entities of type OTU and include all fields in the entities in the output.

Related entities

The OTU entity has the following relationship links:

IsCollectionOf Genome

Command-Line Options


Return all fields.


Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

Output Format

The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.

syntax highlighting: