Robert Olson > Bio-KBase-0.06 > er_scripts/all_entities_OTU

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all_entities_OTU ^

Return all instances of the OTU entity.

An OTU (Organism Taxonomic Unit) is a named group of related genomes.

Example:

    all_entities_OTU -a 

would retrieve all entities of type OTU and include all fields in the entities in the output.

Related entities

The OTU entity has the following relationship links:

IsCollectionOf Genome

Command-Line Options

-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

Output Format

The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.

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