Robert Olson > Bio-KBase-0.06 > er_scripts/query_entity_Annotation

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query_entity_Annotation ^

Query the entity Annotation.

An annotation is a comment attached to a feature. Annotations are used to track the history of a feature's functional assignments and any related issues. The key is the feature ID followed by a colon and a complemented ten-digit sequence number.

Example:

    query_entity_Annotation -a 

Related entities

The Annotation entity has the following relationship links:

Annotates Feature

Command-Line Options

-is field,value

Limit the results to entities where the given field has the given value.

-like field,value

Limit the results to entities where the given field is LIKE (in the sql sense) the given value.

-op operator,field,value

Limit the results to entities where the given field is related to the given value based on the given operator.

The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.

< or lt
> or gt
<= or le
>= or ge
=
LIKE
-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

annotator
comment
annotation_time

Output Format

The standard output is a tab-delimited file containing a column for each requested field.

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