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Bio-KBase-0.06
River stage zero No dependents
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/ er_scripts/query_entity_Model

query_entity_Model

Query the entity Model.

A model specifies a relationship between sets of features and reactions in a cell. It is used to simulate cell growth and gene knockouts to validate annotations.

Example:

    query_entity_Model -a

The Model entity has the following relationship links:

IsARequirementIn Requirement
IsDividedInto ModelCompartment
Manages Biomass
Models Genome

Command-Line Options

-is field,value

Limit the results to entities where the given field has the given value.

-like field,value

Limit the results to entities where the given field is LIKE (in the sql sense) the given value.

-op operator,field,value

Limit the results to entities where the given field is related to the given value based on the given operator.

The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.

< or lt
> or gt
<= or le
>= or ge
=
LIKE
-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

mod_date
name
version
type
status
reaction_count
compound_count
annotation_count

Output Format

The standard output is a tab-delimited file containing a column for each requested field.