atomic_regulons_to_fids [arguments] < input > output
Atomic_regulons are sets of fids that are believed to have identical expression profiles. The estmates were made using expression data, operon estimates, and subsystems.
The standard input should be a tab-separated table (i.e., each line is a tab-separated set of fields). Normally, the last field in each line would contain the identifer. If another column contains the identifier use
where N is the column (from 1) that contains the subsystem.
This is a pipe command. The input is taken from the standard input, and the output is to the standard output.
This script is a wrapper for the CDMI-API call atomic_regulons_to_fids. It is documented as follows:
$return = $obj->atomic_regulons_to_fids($regulons)
$regulons is a regulons $return is a reference to a hash where the key is a regulon and the value is a fids regulons is a reference to a list where each element is a regulon regulon is a string fids is a reference to a list where each element is a fid fid is a string
This is used only if the column containing the subsystem is not the last column.
The standard output is a tab-delimited file. It consists of the input file with extra columns added.
Input lines that cannot be extended are written to stderr.