Example:
corresponds [-a cutoff] genome-1 genome-2
This requests an abbreviated format in which only two columns are added: the projection score and the fid in the target genome. If this is not used 10 column are added. The Cutoff specifies a minimum projection score.
Input genomes. These are either filenames which are expected to contain genome typed-objects (as created by annotate_genome, for instances) or they are KBase genome IDs.
The standard output is a tab-delimited file. It consists of the input file with extra columns added. If the abbreviated format is requested, two columns get added (sc and the fid projected to). If the abbreviated format is not requested, ten columns will be added
[percent-identity,matching-context,b1,e1,ln1,b2,e2,ln2,sc,to-fid]
Input lines that cannot be extended are written to stderr.
To install Bio::KBase, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::KBase
CPAN shell
perl -MCPAN -e shell install Bio::KBase
For more information on module installation, please visit the detailed CPAN module installation guide.