The fids_to_atomic_regulons allows one to map fids into regulons that contain the fids. Normally a fid will be in at most one regulon, but we support multiple regulons.
fids_to_atomic_regulons [arguments] < input > output
The standard input should be a tab-separated table (i.e., each line is a tab-separated set of fields). Normally, the last field in each line would contain the identifer. If another column contains the identifier use
where N is the column (from 1) that contains the subsystem.
This is a pipe command. The input is taken from the standard input, and the output is to the standard output.
This script is a wrapper for the CDMI-API call fids_to_regulons. It is documented as follows:
$return = $obj->fids_to_regulons($fids)
$fids is a fids $return is a reference to a hash where the key is a fid and the value is a regulon_size_pairs fids is a reference to a list where each element is a fid fid is a string regulon_size_pairs is a reference to a list where each element is a regulon_size_pair regulon_size_pair is a reference to a list containing 2 items: 0: a regulon 1: a regulon_size regulon is a string regulon_size is an int
This is used only if the column containing the subsystem is not the last column.
The standard output is a tab-delimited file. It consists of the input file with extra columns added.
Input lines that cannot be extended are written to stderr.