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Rishi Nag > Bio-DB-HTS-2.9

Bio-DB-HTS-2.9

This Release Bio-DB-HTS-2.9  [Download] [Browse 11 Jul 2017
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Repository https://github.com/Ensembl/Bio-DB-HTS
CPAN Testers UNKNOWN (111)   [ View Reports ] [ Perl/Platform Version Matrix ]
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License The Apache License, Version 2.0, January 2004
Special Files
Build.PL
Changes
LICENSE
MANIFEST
META.json
README

Modules

Bio::DB::HTS Read files using HTSlib including BAM/CRAM, Tabix and BCF database files     2.9
Bio::DB::HTS::AlignWrapper Add high-level methods to Bio::DB::HTS::Alignment     2.9
Bio::DB::HTS::Alignment The HTS alignment object     2.9
Bio::DB::HTS::Constants Constants for use with SAM/BAM     2.9
Bio::DB::HTS::Fai     2.9
Bio::DB::HTS::Faidx Perl extension for accessing bgzip compressed and indexed FASTA using htslib     2.9
Bio::DB::HTS::FetchIterator     2.9
Bio::DB::HTS::HTSfile     2.9
Bio::DB::HTS::Kseq Bindings to Kseq     2.9
Bio::DB::HTS::Kseq::Record Entry from a Kseq iterator     2.9
Bio::DB::HTS::Pileup Object passed to pileup() callback     2.9
Bio::DB::HTS::PileupWrapper Add high-level methods to Bio::DB::HTS::Pileup     2.9
Bio::DB::HTS::Query Object representing the query portion of a BAM/SAM alignment     2.9
Bio::DB::HTS::ReadIterator     2.9
Bio::DB::HTS::Segment     2.9
Bio::DB::HTS::Segment::Iterator     2.9
Bio::DB::HTS::SplitAlignmentPart     2.9
Bio::DB::HTS::Tabix Object oriented access to the underlying tbx C methods     2.9
Bio::DB::HTS::Tabix::Iterator XS module wrapping around a tabix hts_itr_t     2.9
Bio::DB::HTS::Target Object representing the query portion of a BAM/SAM alignment in NATIVE alignment     2.9
Bio::DB::HTS::VCF Read VCF/BCF data files     2.9
Bio::DB::HTS::VCF::Header     2.9
Bio::DB::HTS::VCF::HeaderPtr     2.9
Bio::DB::HTS::VCF::Row     2.9
Bio::DB::HTS::VCF::RowPtr     2.9
Bio::DB::HTS::VCF::Sweep     2.9
Bio::DB::HTSfile      
Bio::SeqFeature::HTSCoverage     2.9

Documentation

Bio::DB::HTS::Kseq::Iterator The Kseq iterator