Build.PL
INSTALL.pl
Changes
cpanfile
DISCLAIMER
lib/Bio/DB/HTS/Alignment.pm
lib/Bio/DB/HTS/AlignWrapper.pm
lib/Bio/DB/HTS/Faidx.pm
lib/Bio/DB/HTS/Faidx.xs
lib/Bio/DB/HTS/FetchIterator.pm
lib/Bio/DB/HTS/Kseq.pm
lib/Bio/DB/HTS/Kseq/Iterator.pod
lib/Bio/DB/HTS/Kseq/Record.pm
lib/Bio/DB/HTS/Pileup.pm
lib/Bio/DB/HTS/PileupWrapper.pm
lib/Bio/DB/HTS/Query.pm
lib/Bio/DB/HTS/ReadIterator.pm
lib/Bio/DB/HTS/Tabix.pm
lib/Bio/DB/HTS/Target.pm
lib/Bio/DB/HTS.pm
lib/Bio/DB/HTS.xs
lib/Bio/DB/HTS/Constants.pm
lib/Bio/DB/HTS/Segment.pm
lib/Bio/DB/HTS/VCF.pm
lib/Bio/DB/HTS/VCF/Header.pm
lib/Bio/DB/HTS/VCF/HeaderPtr.pm
lib/Bio/DB/HTS/VCF/Row.pm
lib/Bio/DB/HTS/VCF/RowPtr.pm
lib/Bio/DB/HTS/Tabix/Iterator.pm
LICENSE
MANIFEST			This list of files
META.json
META.yml
ppport.h
README
scripts/build_options.sh
scripts/convert_gz_2_bgz.sh
t/01bam.t
t/02faidx.t
t/03cram.t
t/04tabix.t
t/05vcf.t
t/06kseq.t
t/07cramwrite.t
t/08bamwrite.t
t/kseq_data/bug2335.fastq
t/kseq_data/evil_wrapping.fastq
t/kseq_data/example.fasta
t/kseq_data/example.fastq
t/kseq_data/illumina_faked.fastq
t/kseq_data/sanger_93.fastq
t/kseq_data/sanger_faked.fastq
t/kseq_data/solexa_example.fastq
t/kseq_data/solexa_faked.fastq
t/kseq_data/test1_sanger.fastq
t/kseq_data/test2_solexa.fastq
t/kseq_data/test3_illumina.fastq
t/kseq_data/tricky.fastq
t/kseq_data/wrapping_issues.fastq
t/kseq_data/zero_qual.fastq
t/data/00README.txt
t/data/data.vcf.gz
t/data/data.vcf.gz.tbi
t/data/dm3_3R_4766911_4767130.sam
t/data/dm3_3R_4766911_4767130.sam.bam
t/data/dm3_3R_4766911_4767130.sam.sorted.bam
t/data/ex1.bam
t/data/ex1.fa
t/data/ex1.sam.gz
t/data/ex2.bam
t/data/ex2.sam.gz
t/data/Saccharomyces_cerevisiae.R64-1-1.dna.chromosome.I.fa.gz
t/data/yeast.fasta
t/data/yeast.sorted.cram
t/data/no_index.tsv.gz
t/data/test.bcf
t/data/test.tsv.gz
t/data/test.tsv.gz.tbi
t/data/test.vcf.gz
t/data/test.vcf.gz.tbi
typemap