NAME

Bio::Das::ProServer::SourceAdaptor::simple_interaction

VERSION

$LastChangedRevision: 549 $

SYNOPSIS

  Interactions involving 001:
  <host>/das/<source>/interaction?interactor=001
  
  Interactions between 001 and 002
  <host>/das/<source>/interaction?interactor=001;interactor=002
  
  Interactions with some form of evidence:
  <host>/das/<source>/interaction?interactor=001;detail=property:evidence
  
  Interactions of a specific type:
  <host>/das/<source>/interaction?interactor=001;detail=property:type,value:foo

DESCRIPTION

  Serves up interaction DAS responses, using a file-based transport.

SUBROUTINES/METHODS

capabilities

build_interaction

DIAGNOSTICS

CONFIGURATION AND ENVIRONMENT

  [simple_interaction]
  adaptor               = simple_interaction
  state                 = on
  transport             = file
  filename              = /data/interactions.txt
  interactors.filename  = /data/interactors.txt
  coordinates           = MyCoordSys -> 001
  
  Tab-separated file formats:
  
  --interactors.txt--
  id    label   dbSource        dbSourceCvId    dbVersion       dbAccession     dbCoordSys      sequence        property        value   propertyCvId    valueCvId       start   end     startStatus     endStatus       startStatusCvId endStatusCvId
  
  --interactions.txt--
  interactor,interactor,..(sorted)      label   dbSource        dbSourceCvId    dbVersion       dbAccession     property        value   propertyCvId    valueCvId

DEPENDENCIES

Bio::Das::ProServer::SourceAdaptor

INCOMPATIBILITIES

None reported

BUGS AND LIMITATIONS

None reported

AUTHOR

  Andy Jenkinson <andy.jenkinson@ebi.ac.uk>

LICENSE AND COPYRIGHT

Copyright (c) 2007 EMBL-EBI