Rutger Vos > Bio-Phylo-0.17_RC6 > Bio::Phylo::Parsers::Table

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Source   Latest Release: Bio-Phylo-0.17_RC9

NAME ^

Bio::Phylo::Parsers::Table - Parses tab- (or otherwise) delimited matrices. No serviceable parts inside.

DESCRIPTION ^

This module is used to import data and taxa from plain text files or strings. The following additional argument must be used in the call to Bio::Phylo::IO:

 -type => (one of [DNA|RNA|STANDARD|PROTEIN|NUCLEOTIDE|CONTINUOUS])

In addition, these arguments may be used to indicate line separators (default is "\n") and field separators (default is "\t"):

 -fieldsep => '\t',
 -linesep  => '\n'

SEE ALSO ^

Bio::Phylo::IO

The table parser is called by the Bio::Phylo::IO object. Look there to learn how to parse tab- (or otherwise) delimited matrices.

Bio::Phylo::Manual

Also see the manual: Bio::Phylo::Manual.

REVISION ^

 $Id: Table.pm 4234 2007-07-17 13:41:02Z rvosa $