Rutger Vos > Bio-Phylo-0.55 > Bio::Phylo::Matrices::Datatype::Restriction

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Source   Latest Release: Bio-Phylo-0.58

NAME ^

Bio::Phylo::Matrices::Datatype::Restriction - Validator subclass, no serviceable parts inside

DESCRIPTION ^

The Bio::Phylo::Matrices::Datatype::* classes are used to validate data contained by Bio::Phylo::Matrices::Matrix and Bio::Phylo::Matrices::Datum objects.

METHODS

get_ids_for_special_symbols()

Gets state-to-id mapping for missing and gap symbols

 Type    : Accessor
 Title   : get_ids_for_special_symbols
 Usage   : my %ids = %{ $obj->get_ids_for_special_symbols };
 Function: Returns state-to-id mapping
 Returns : An empty hash reference
 Args    : None
 Notes   : This method is here as an override
           because restriction site data has
           no missing or gap symbols, just
           presence/absence

SEE ALSO ^

There is a mailing list at https://groups.google.com/forum/#!forum/bio-phylo for any user or developer questions and discussions.

Bio::Phylo::Matrices::Datatype

This class subclasses Bio::Phylo::Matrices::Datatype.

Bio::Phylo::Manual

Also see the manual: Bio::Phylo::Manual and http://rutgervos.blogspot.com.

CITATION ^

If you use Bio::Phylo in published research, please cite it:

Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. http://dx.doi.org/10.1186/1471-2105-12-63

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