Rutger Vos > Bio-Phylo-0.55 > Bio::Phylo::PhyloWS::Service::Timetree

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Source   Latest Release: Bio-Phylo-0.58

NAME ^

Bio::Phylo::PhyloWS::Service::Timetree - PhyloWS service wrapper for Timetree

SYNOPSIS ^

 # inside a CGI script:
 use CGI;
 use Bio::Phylo::PhyloWS::Service::Timetree;

 my $cgi = CGI->new;
 my $service = Bio::Phylo::PhyloWS::Service::Timetree->new( '-url' => $url );
 $service->handle_request($cgi);

DESCRIPTION ^

This is an example implementation of a PhyloWS service. The service wraps around the timetree web site (using screen scraping) and returns project objects that include a tree for every search result.

METHODS ^

ACCESSORS

get_query_result()

Gets a phylows cql query result

 Type    : Accessor
 Title   : get_query_result
 Usage   : my $result = $obj->get_query_result( $query );
 Function: Gets a query result 
 Returns : Bio::Phylo::Project
 Args    : Required: $query
get_supported_formats()

Gets an array ref of supported formats

 Type    : Accessor
 Title   : get_supported_formats
 Usage   : my @formats = @{ $obj->get_supported_formats };
 Function: Gets an array ref of supported formats
 Returns : [ qw(nexml nexus newick html) ]
 Args    : NONE
get_redirect()

Gets a redirect URL if relevant

 Type    : Accessor
 Title   : get_redirect
 Usage   : my $url = $obj->get_redirect;
 Function: Gets a redirect URL if relevant
 Returns : String
 Args    : $cgi
 Comments: This method is called by handle_request so that
           services can 303 redirect a record lookup to 
           another URL. By default, this method returns 
           undef (i.e. no redirect), but if this implementation
           is called to handle a request that specifies 
           'format=html' the request is forwarded to the
           appropriate page on the http://timetree.org website

SEE ALSO ^

There is a mailing list at https://groups.google.com/forum/#!forum/bio-phylo for any user or developer questions and discussions.

Also see the manual: Bio::Phylo::Manual and http://rutgervos.blogspot.com

CITATION ^

If you use Bio::Phylo in published research, please cite it:

Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. http://dx.doi.org/10.1186/1471-2105-12-63

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