Bio::Phylo::Matrices::Datatype::Restriction - Validator subclass, no serviceable parts inside
The Bio::Phylo::Matrices::Datatype::* classes are used to validate data contained by Bio::Phylo::Matrices::Matrix and Bio::Phylo::Matrices::Datum objects.
Gets state-to-id mapping for missing and gap symbols
Type : Accessor Title : get_ids_for_special_symbols Usage : my %ids = %{ $obj->get_ids_for_special_symbols }; Function: Returns state-to-id mapping Returns : An empty hash reference Args : None Notes : This method is here as an override because restriction site data has no missing or gap symbols, just presence/absence
There is a mailing list at https://groups.google.com/forum/#!forum/bio-phylo for any user or developer questions and discussions.
This class subclasses Bio::Phylo::Matrices::Datatype.
Also see the manual: Bio::Phylo::Manual and http://rutgervos.blogspot.com.
If you use Bio::Phylo in published research, please cite it:
Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. http://dx.doi.org/10.1186/1471-2105-12-63
To install Bio::Phylo, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Phylo
CPAN shell
perl -MCPAN -e shell install Bio::Phylo
For more information on module installation, please visit the detailed CPAN module installation guide.