Rutger Vos > Bio-Phylo > Bio::Phylo::Parsers::Phyloxml

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NAME ^

Bio::Phylo::Parsers::Phyloxml - Parser used by Bio::Phylo::IO, no serviceable parts inside

DESCRIPTION ^

This module parses phyloxml data. It is called by the Bio::Phylo::IO facade, don't call it directly. In addition to parsing from files, handles or strings (which are specified by the -file, -handle and -string arguments) this parser can also parse xml directly from a url (-url => $phylows_output), provided you have LWP installed.

SEE ALSO ^

There is a mailing list at https://groups.google.com/forum/#!forum/bio-phylo for any user or developer questions and discussions.

Bio::Phylo::IO

The phyloxml parser is called by the Bio::Phylo::IO object. Look there to learn how to parse phyloxml (or any other data Bio::Phylo supports).

Bio::Phylo::Manual

Also see the manual: Bio::Phylo::Manual and http://rutgervos.blogspot.com.

http://www.phyloxml.org

For more information about the phyloxml data standard, visit http://www.phyloxml.org

CITATION ^

If you use Bio::Phylo in published research, please cite it:

Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. http://dx.doi.org/10.1186/1471-2105-12-63

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