Bio::Phylo::Parsers::Table - Parser used by Bio::Phylo::IO, no serviceable parts inside
This module is used to import data and taxa from plain text files or strings. The following additional argument must be used in the call to Bio::Phylo::IO:
-type => (one of [DNA|RNA|STANDARD|PROTEIN|NUCLEOTIDE|CONTINUOUS])
In addition, these arguments may be used to indicate line separators (default is "\n") and field separators (default is "\t"):
-fieldsep => '\t', -linesep => '\n'
There is a mailing list at https://groups.google.com/forum/#!forum/bio-phylo for any user or developer questions and discussions.
The table parser is called by the Bio::Phylo::IO object. Look there to learn how to parse tab- (or otherwise) delimited matrices.
Also see the manual: Bio::Phylo::Manual and http://rutgervos.blogspot.com
If you use Bio::Phylo in published research, please cite it:
Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. http://dx.doi.org/10.1186/1471-2105-12-63
To install Bio::Phylo, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Phylo
CPAN shell
perl -MCPAN -e shell install Bio::Phylo
For more information on module installation, please visit the detailed CPAN module installation guide.