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Rutger Vos > Bio-PhyloTastic-0.2 > Bio::PhyloTastic::TNRS

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NAME ^

Bio::PhyloTastic::TNRS - Taxonomic Name Reconciliation Service

SYNOPSIS ^

 phylotastic TNRS -i <infile> -o <outfile>

DESCRIPTION ^

This module calls the TNRS service http://api.phylotastic.org/tnrs/

OPTIONS AND ARGUMENTS ^

-i infile

An input file. Default is a text file with one name per line. Required.

-o outfile

An output file name. If '-', prints output to STDOUT. Required.

-d informat

An input format, including NEXUS, Newick, NeXML, PhyloXML, TaxList. Optional. Default is TaxList (i.e. a simple text file).

-s outformat

An output format, including NeXML, TaxList. Optional. Default is TaxList (i.e. a simple text file).

-t timeout

Number of seconds until user agent times out. Optional. Default is 60.

-t wait

Number of seconds between polling the TNRS service. Optional. Default is 5.

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